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LOC119387907 ceramide synthase 6 [ Rhipicephalus sanguineus (brown dog tick) ]

Gene ID: 119387907, updated on 27-Mar-2024

Summary

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Gene symbol
LOC119387907
Gene description
ceramide synthase 6
See related
VectorBase:RSAN_035021; EnsemblRapid:LOC119387907
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhipicephalus sanguineus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Rhipicephalus
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Genomic context

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See LOC119387907 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
101 current BIME_Rsan_1.4 (GCF_013339695.2) 3 NC_051178.1 (190820492..190850833)
100 previous assembly ASM1333969v1 (GCF_013339695.1) 3 NC_051178.1 (190820492..190851932)

Chromosome 3 - NC_051178.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase 16 Neighboring gene dynactin subunit 2 Neighboring gene ribosomal protein L27 Neighboring gene actin-5C Neighboring gene integrin beta-PS Neighboring gene Utx histone demethylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingosine N-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ceramide synthase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhipicephalus sanguineus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIME_Rsan_1.4

Genomic

  1. NC_051178.1 Reference BIME_Rsan_1.4

    Range
    190820492..190850833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037655473.2 → XP_037511401.1  ceramide synthase 6

    UniProtKB/TrEMBL
    A0A9D4T0V5
    Related
    XP_037511401.1, XM_037655473.2
    Conserved Domains (2) summary
    cd00086
    Location:75 → 123
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03798
    Location:134 → 327
    TRAM_LAG1_CLN8; TLC domain
Nucleotide Protein
Heading Accession and Version

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