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iqsec3b IQ motif and Sec7 domain ArfGEF 3b [ Scomber japonicus (chub mackerel) ]

Gene ID: 128358746, updated on 25-Mar-2024

Summary

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Gene symbol
iqsec3b
Gene description
IQ motif and Sec7 domain ArfGEF 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Scomber japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Scomber
Orthologs
zebrafish all
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Genomic context

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See iqsec3b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_02 current fScoJap1.pri (GCF_027409825.1) 5 NC_070582.1 (18920668..18948896, complement)

Chromosome 5 - NC_070582.1Genomic Context describing neighboring genes Neighboring gene otogelin-like Neighboring gene protein tyrosine phosphatase receptor type Q Neighboring gene WAS protein family homolog 1 Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070582.1 Chromosome 5 Reference fScoJap1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
IQ motif and SEC7 domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027409825.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fScoJap1.pri

Genomic

  1. NC_070582.1 Reference fScoJap1.pri

    Range
    18920668..18948896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053319126.1 → XP_053175101.1  IQ motif and SEC7 domain-containing protein 3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases