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LOC129319349 sphingosine-1-phosphate lyase [ Prosopis cineraria ]

Gene ID: 129319349, updated on 16-Nov-2023

Summary

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Gene symbol
LOC129319349
Gene description
sphingosine-1-phosphate lyase
Gene type
protein coding
RefSeq status
MODEL
Organism
Prosopis cineraria
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Caesalpinioideae; mimosoid clade; Mimoseae; Prosopis
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Genomic context

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See LOC129319349 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2901754v1 (GCF_029017545.1) Unplaced Scaffold NW_026555340.1 (33241010..33254814, complement)

NW_026555340.1Genomic Context describing neighboring genes Neighboring gene protein CTR9 homolog Neighboring gene photosynthetic NDH subunit of lumenal location 5, chloroplastic Neighboring gene uncharacterized LOC129319894

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026555340 Unplaced Scaffold Reference ASM2901754v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphinganine-1-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029017545.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2901754v1 Primary Assembly

Genomic

  1. NW_026555340.1 Reference ASM2901754v1 Primary Assembly

    Range
    33241010..33254814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054964394.1 → XP_054820369.1  sphingosine-1-phosphate lyase isoform X1

  2. XM_054964395.1 → XP_054820370.1  sphingosine-1-phosphate lyase isoform X2

  3. XM_054964396.1 → XP_054820371.1  sphingosine-1-phosphate lyase isoform X3

Nucleotide Protein
Heading Accession and Version

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