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LOC131620108 phosphoenolpyruvate carboxykinase (ATP) 1-like [ Vicia villosa (hairy vetch) ]

Gene ID: 131620108, updated on 23-Oct-2023

Summary

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Gene symbol
LOC131620108
Gene description
phosphoenolpyruvate carboxykinase (ATP) 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicia villosa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Vicia
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Genomic context

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See LOC131620108 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
12
Annotation release Status Assembly LG Location
RS_2023_08 current Vvil1.0 (GCF_029867415.1) LG7 NC_081186.1 (121610273..121613746)

Linkage Group LG7 - NC_081186.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131620105 Neighboring gene aspartic proteinase CDR1-like Neighboring gene uncharacterized LOC131620109 Neighboring gene phosphoenolpyruvate carboxykinase (ATP) 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_081186.1 Chromosome LG7 Reference Vvil1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoenolpyruvate carboxykinase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoenolpyruvate carboxykinase (ATP) 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029867415.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vvil1.0

Genomic

  1. NC_081186.1 Reference Vvil1.0

    Range
    121610273..121613746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058891127.1 → XP_058747110.1  phosphoenolpyruvate carboxykinase (ATP) 1-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases