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LOC133698552 DNA (cytosine-5)-methyltransferase 1-like [ Populus nigra ]

Gene ID: 133698552, updated on 8-May-2024

Summary

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Gene symbol
LOC133698552
Gene description
DNA (cytosine-5)-methyltransferase 1-like
See related
EnsemblRapid:ENSZTXG00000031434
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus nigra
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC133698552 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_01 current ddPopNigr1.1 (GCF_951802175.1) 7 NC_084858.1 (8603948..8612284, complement)

Chromosome 7 - NC_084858.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC133698671 Neighboring gene uncharacterized LOC133698447 Neighboring gene uncharacterized LOC133698514 Neighboring gene uncharacterized LOC133699462

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084858.1 Chromosome 7 Reference ddPopNigr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA (cytosine-5-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA (cytosine-5)-methyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_951802175.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ddPopNigr1.1

Genomic

  1. NC_084858.1 Reference ddPopNigr1.1

    Range
    8603948..8612284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062121516.1 → XP_061977500.1  DNA (cytosine-5)-methyltransferase 1-like

    Related
    ENSZTXP00000043137.1, ENSZTXT00000047862.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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