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LOC137811277 phosphoenolpyruvate carboxykinase (ATP) 1-like [ Phaseolus vulgaris ]

Gene ID: 137811277, updated on 15-Oct-2024

Summary

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Gene symbol
LOC137811277
Gene description
phosphoenolpyruvate carboxykinase (ATP) 1-like
Locus tag
PHAVU_002G139200
Gene type
protein coding
RefSeq status
MODEL
Organism
Phaseolus vulgaris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus
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Genomic context

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See LOC137811277 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_09 current P. vulgaris v2.0 (GCF_000499845.2) 2 NC_023758.2 (29011305..29017595, complement)

Chromosome 2 - NC_023758.2Genomic Context describing neighboring genes Neighboring gene probable starch synthase 4, chloroplastic/amyloplastic Neighboring gene uncharacterized LOC137811275 Neighboring gene probable E3 ubiquitin-protein ligase EDA40 Neighboring gene auxin-responsive protein IAA8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023758.2 Chromosome 2 Reference P. vulgaris v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. Bellucci E, et al. Plant Cell, 2014 May. PMID 24850850, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoenolpyruvate carboxykinase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoenolpyruvate carboxykinase (ATP) 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000499845.2-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P. vulgaris v2.0 Primary Assembly

Genomic

  1. NC_023758.2 Reference P. vulgaris v2.0 Primary Assembly

    Range
    29011305..29017595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068612959.1 → XP_068469060.1  phosphoenolpyruvate carboxykinase (ATP) 1-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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