U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC18601102 long chain base biosynthesis protein 2a [ Theobroma cacao (cacao) ]

Gene ID: 18601102, updated on 19-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC18601102
Gene description
long chain base biosynthesis protein 2a
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC18601102 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 4 NC_030853.1 (2893449..2898111)

Chromosome 4 - NC_030853.1Genomic Context describing neighboring genes Neighboring gene protein AUXIN SIGNALING F-BOX 2 Neighboring gene prostatic spermine-binding protein Neighboring gene uncharacterized LOC108661772 Neighboring gene B3 domain-containing transcription factor FUS3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_030853.1 Chromosome 4 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
long chain base biosynthesis protein 2a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030853.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    2893449..2898111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007031925.2 → XP_007031987.1  long chain base biosynthesis protein 2a

    See identical proteins and their annotated locations for XP_007031987.1

    UniProtKB/TrEMBL
    A0A061EE36, A0A061EKT3
    Conserved Domains (2) summary
    PLN02483
    Location:1 → 489
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:52 → 465
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases