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LOC18772617 putative pentatricopeptide repeat-containing protein At3g23330 [ Prunus persica (peach) ]

Gene ID: 18772617, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18772617
Gene description
putative pentatricopeptide repeat-containing protein At3g23330
Locus tag
PRUPE_6G360800
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18772617 in Genome Data Viewer
Location:
chromosome: G6
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G6 NC_034014.1 (30440664..30443863)

Chromosome G6 - NC_034014.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein ZFN-like Neighboring gene GDT1-like protein 3 Neighboring gene CRIB domain-containing protein RIC4 Neighboring gene photosystem I reaction center subunit XI, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034014.1 Chromosome G6 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pentatricopeptide repeat-containing protein At3g23330

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034014.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    30440664..30443863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007207977.2 → XP_007208039.2  putative pentatricopeptide repeat-containing protein At3g23330

    UniProtKB/TrEMBL
    A0A251P0Q3
    Conserved Domains (2) summary
    sd00004
    Location:449 → 476
    PPR; PPR repeat [structural motif]
    cl25449
    Location:43 → 751
    PPR_2; PPR repeat family
Nucleotide Protein Strain
Heading Accession and Version

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