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Pdw03_0918 Pyridoxal phosphate-dependent transferase, major domain [ Penicillium digitatum ]

Gene ID: 26232677, updated on 31-Oct-2024

Summary

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Gene symbol
Pdw03_0918
Gene description
Pyridoxal phosphate-dependent transferase, major domain
Locus tag
Pdw03_0918
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Penicillium digitatum (strain: PdW03, nat-host: Citrus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium
Old locus tag
PDIP_43590
Orthologs
Aspergillus fumigatus all
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Genomic context

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See Pdw03_0918 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_089387.1 (2729810..2731522)

Chromosome 4 - NC_089387.1Genomic Context describing neighboring genes Neighboring gene HMG box-containing protein C19G7.04 Neighboring gene 1,3-beta-glucan synthase catalytic subunit FksP Neighboring gene Glycoside hydrolase, superfamily Neighboring gene Glycosyl hydrolase 47 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089387.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Pyridoxal phosphate-dependent transferase, major domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_089387.1 Reference assembly

    Range
    2729810..2731522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014679163.1 → XP_014534649.1  Pyridoxal phosphate-dependent transferase, major domain [Penicillium digitatum]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7T6XRE4, K9FDK3, K9FXM3
    Conserved Domains (1) summary
    cl18945
    Location:51 → 502
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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