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SHOC2 SHOC2, leucine rich repeat scaffold protein [ Gallus gallus (chicken) ]

Gene ID: 423894, updated on 17-Aug-2024

Summary

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Symbol
SHOC2provided by CGNC
Full Name
SHOC2, leucine rich repeat scaffold proteinprovided by CGNC
Primary source
CGNC:6658
See related
Ensembl:ENSGALG00010018299
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SHOC2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (26955797..27015827)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (26846842..26906705)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene programmed cell death 4 Neighboring gene uncharacterized LOC124418399 Neighboring gene uncharacterized LOC423893 Neighboring gene BBSome interacting protein 1 Neighboring gene adrenoceptor alpha 2A Neighboring gene uncharacterized LOC112532709

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat protein SHOC-2
Names
protein soc-2 homolog
protein sur-8 homolog
soc-2 suppressor of clear homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397283.1 → NP_001384212.1  leucine-rich repeat protein SHOC-2

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000232
    UniProtKB/TrEMBL
    A0A8V0Z563
    Related
    ENSGALP00010026264.1, ENSGALT00010044166.1
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:264 → 285
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    26955797..27015827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025151613.3 → XP_025007381.2  leucine-rich repeat protein SHOC-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z563
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:264 → 285
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_015288653.4 → XP_015144139.2  leucine-rich repeat protein SHOC-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z563
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:264 → 285
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_015288655.4 → XP_015144141.2  leucine-rich repeat protein SHOC-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z563
    Related
    ENSGALP00010026256.1, ENSGALT00010044156.1
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:264 → 285
    LRR_RI; leucine-rich repeat [structural motif]

  4. XM_040702442.2 → XP_040558376.1  leucine-rich repeat protein SHOC-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z563
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:264 → 285
    LRR_RI; leucine-rich repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    26846842..26906705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046920334.1 → XP_046776290.1  leucine-rich repeat protein SHOC-2 isoform X1

  2. XM_046920331.1 → XP_046776287.1  leucine-rich repeat protein SHOC-2 isoform X1

  3. XM_046920330.1 → XP_046776286.1  leucine-rich repeat protein SHOC-2 isoform X1

  4. XM_046920332.1 → XP_046776288.1  leucine-rich repeat protein SHOC-2 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5F4C4.1 GenPept UniProtKB/Swiss-Prot:Q5F4C4

Gene LinkOut

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Molecular Biology Databases
Research Materials