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cog5 component of oligomeric golgi complex 5 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102694295, updated on 21-Oct-2024

Summary

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Gene symbol
cog5
Gene description
component of oligomeric golgi complex 5
See related
Ensembl:ENSLOCG00000015817
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See cog5 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 7 NC_090702.1 (39691324..39865129, complement)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG8 NC_023186.1 (16508847..16684078)

Chromosome 7 - NC_090702.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma Neighboring gene cAMP-dependent protein kinase type II-beta regulatory subunit Neighboring gene HMG-box transcription factor 1 Neighboring gene G protein-coupled receptor 22a Neighboring gene dihydrouridine synthase 4-like (S. cerevisiae) Neighboring gene B cell receptor associated protein 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090702.1 Reference fLepOcu1.hap2

    Range
    39691324..39865129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006633320.3 → XP_006633383.2  conserved oligomeric Golgi complex subunit 5

    UniProtKB/TrEMBL
    W5NFR5
    Related
    ENSLOCP00000019474.1
    Conserved Domains (1) summary
    pfam10392
    Location:21 → 143
    COG5; Golgi transport complex subunit 5
Nucleotide Protein
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Gene LinkOut

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