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    LOC112325266 GDT1-like protein 4 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 112325266, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC112325266
    Gene description
    GDT1-like protein 4
    Locus tag
    POPTR_019G116100v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC112325266 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 19 NC_037303.2 (14325933..14327023)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 19 NC_037303.1 (14491093..14492165)

    Chromosome 19 - NC_037303.2Genomic Context describing neighboring genes Neighboring gene ankyrin repeat-containing protein NPR4 Neighboring gene small nucleolar RNA Z278 Neighboring gene small nucleolar RNA snoR97 Neighboring gene uncharacterized LOC7458860 Neighboring gene vesicle-associated protein 4-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in Golgi calcium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDT1-like protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037303.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      14325933..14327023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024591267.2 → XP_024447035.1  GDT1-like protein 4

      UniProtKB/TrEMBL
      B9HWL1, U5FHP7
      Conserved Domains (1) summary
      COG2119
      Location:9 → 231
      Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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