Host genotype and time dependent antigen presentation of viral peptides: predictions from theory. (Q46832079): Difference between revisions

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@@ Property / cites work @@
+Quantitative intracellular kinetics of HIV type 1
@@ Property / cites work: Quantitative intracellular kinetics of HIV type 1 / rank @@
+Normal rank
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reference URL: https://api.crossref.org/works/10.1038%2FS41598-017-14415-8
retrieved: 7 January 2021Timestamp +2021-01-07T00:00:00Z
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+Effects of RNA splicing and post-transcriptional regulation on HIV-1 growth: a quantitative and integrated perspective
+Normal rank
+stated in: Crossref
reference URL: https://api.crossref.org/works/10.1038%2FS41598-017-14415-8
retrieved: 7 January 2021Timestamp +2021-01-07T00:00:00Z
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+Identification of residues in the N-terminal acidic domain of HIV-1 Vpr essential for virion incorporation
+Normal rank
+stated in: Crossref
reference URL: https://api.crossref.org/works/10.1038%2FS41598-017-14415-8
retrieved: 7 January 2021Timestamp +2021-01-07T00:00:00Z
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+Assembly and dissociation of human leukocyte antigen (HLA)-A2 studied by real-time fluorescence resonance energy transfer
+Normal rank
+stated in: Crossref
reference URL: https://api.crossref.org/works/10.1038%2FS41598-017-14415-8
retrieved: 7 January 2021Timestamp +2021-01-07T00:00:00Z
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Revision as of 15:02, 17 July 2021

scientific article published on 30 October 2017

Language	Label	Description	Also known as
English	Host genotype and time dependent antigen presentation of viral peptides: predictions from theory.	scientific article published on 30 October 2017

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29084996%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Host genotype and time dependent antigen presentation of viral peptides: predictions from theory (English)

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8 April 2020

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8 April 2020

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8 April 2020

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8 April 2020

author name string

R Charlotte Eccleston

1

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25 December 2017

http://europepmc.org/abstract/PMC/5662608

Peter V Coveney

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25 December 2017

http://europepmc.org/abstract/PMC/5662608

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30 October 2017

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8 April 2020

Scientific Reports

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8 April 2020

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8 April 2020

1

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8 April 2020

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8 April 2020

https://scigraph.springernature.com/pub.10.1038/s41598-017-14415-8

0 references

The Role of Multiscale Protein Dynamics in Antigen Presentation and T Lymphocyte Recognition

1 reference

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24 May 2018

The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design

1 reference

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24 May 2018

Large-scale detection of antigen-specific T cells using peptide-MHC-I multimers labeled with DNA barcodes.

1 reference

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24 May 2018

Association of the HLA-B*52 allele with non-progression to AIDS in Brazilian HIV-1-infected individuals

1 reference

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24 May 2018

A review of techniques for parameter sensitivity analysis of environmental models

1 reference

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24 May 2018

Cell-Mediated Immunity in Elite Controllers Naturally Controlling HIV Viral Load.

1 reference

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24 May 2018

Kinetics of antigen expression and epitope presentation during virus infection.

1 reference

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24 May 2018

Early antigen presentation of protective HIV-1 KF11Gag and KK10Gag epitopes from incoming viral particles facilitates rapid recognition of infected cells by specific CD8+ T cells

1 reference

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24 May 2018

Early HLA-B*57-restricted CD8+ T lymphocyte responses predict HIV-1 disease progression

1 reference

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24 May 2018

Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

1 reference

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24 May 2018

Promiscuous binding of extracellular peptides to cell surface class I MHC protein

1 reference

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24 May 2018

Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?

1 reference

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24 May 2018

A peptide filtering relation quantifies MHC class I peptide optimization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Predicting peptide binding affinities to MHC molecules using a modified semi-empirical scoring function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Human leukocyte antigen variants B*44 and B*57 are consistently favorable during two distinct phases of primary HIV-1 infection in sub-Saharan Africans with several viral subtypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Major histocompatibility complex class I binding predictions as a tool in epitope discovery.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

THE GROWTH OF BACTERIOPHAGE

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

T-cell epitope prediction: rescaling can mask biological variation between MHC molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

HLA-B57/B*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte [corrected] recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Reduced viral replication capacity of human immunodeficiency virus type 1 subtype C caused by cytotoxic-T-lymphocyte escape mutations in HLA-B57 epitopes of capsid protein

1 reference

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24 May 2018

NetMHCpan, a method for MHC class I binding prediction beyond humans

1 reference

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24 May 2018

Impact of MHC class I diversity on immune control of immunodeficiency virus replication

1 reference

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24 May 2018

Central role of reverting mutations in HLA associations with human immunodeficiency virus set point

1 reference

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24 May 2018

Transmission of human immunodeficiency virus type 1 from a patient who developed AIDS to an elite suppressor

1 reference

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24 May 2018

Antigen load and viral sequence diversification determine the functional profile of HIV-1-specific CD8+ T cells

1 reference

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24 May 2018

Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

1 reference

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24 May 2018

HLA alleles associated with slow progression to AIDS truly prefer to present HIV-1 p24.

1 reference

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24 May 2018

Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection

1 reference

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24 May 2018

Recognition of a defined region within p24 gag by CD8+ T cells during primary human immunodeficiency virus type 1 infection in individuals expressing protective HLA class I alleles

1 reference

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A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus

1 reference

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24 May 2018

Maintenance of viral suppression in HIV-1-infected HLA-B*57+ elite suppressors despite CTL escape mutations

1 reference

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Robust growth of human immunodeficiency virus type 1 (HIV-1)

1 reference

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1 reference

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Novel and promiscuous CTL epitopes in conserved regions of Gag targeted by individuals with early subtype C HIV type 1 infection from southern Africa

1 reference

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24 May 2018

The stoichiometry of Gag protein in HIV-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Making sense of mass destruction: quantitating MHC class I antigen presentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

CD8(+) lymphocytes respond to different HIV epitopes in seronegative and infected subjects

1 reference

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24 May 2018

26S proteasomes and immunoproteasomes produce mainly N-extended versions of an antigenic peptide

1 reference

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24 May 2018

The HIV-1 regulatory proteins Tat and Rev are frequently targeted by cytotoxic T lymphocytes derived from HIV-1-infected individuals

1 reference

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24 May 2018

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1 reference

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24 May 2018

Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses.

1 reference

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24 May 2018

Constant mean viral copy number per infected cell in tissues regardless of high, low, or undetectable plasma HIV RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Molecular and functional analysis of a conserved CTL epitope in HIV-1 p24 recognized from a long-term nonprogressor: constraints on immune escape associated with targeting a sequence essential for viral replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

The proteolytic cleavage of human immunodeficiency virus type 1 Nef does not correlate with its ability to stimulate virion infectivity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Novel, cross-restricted, conserved, and immunodominant cytotoxic T lymphocyte epitopes in slow progressors in HIV type 1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Naturally processed viral peptides recognized by cytotoxic T lymphocytes on cells chronically infected by human immunodeficiency virus type 1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

Identification and characterization of conserved and variable regions in the envelope gene of HTLV-III/LAV, the retrovirus of AIDS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

24 May 2018

HLA class I associations with rates of HIV-1 seroconversion and disease progression in the Pumwani Sex Worker Cohort.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

15 August 2018

Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

15 August 2018

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5662608

15 August 2018

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-14415-8

21 January 2018

Exact stochastic simulation of coupled chemical reactions

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-14415-8

21 January 2018

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-14415-8

21 January 2018

Quantitative intracellular kinetics of HIV type 1

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-14415-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Effects of RNA splicing and post-transcriptional regulation on HIV-1 growth: a quantitative and integrated perspective

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-14415-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Identification of residues in the N-terminal acidic domain of HIV-1 Vpr essential for virion incorporation

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-14415-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Assembly and dissociation of human leukocyte antigen (HLA)-A2 studied by real-time fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-14415-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1038/S41598-017-14415-8

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29084996%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29084996%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29084996%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

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