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2020 – today
- 2024
[j73]Weijuan Liang, Qingzhao Zhang, Shuangge Ma:
Hierarchical false discovery rate control for high-dimensional survival analysis with interactions. Comput. Stat. Data Anal. 192: 107906 (2024)- [j72]Xinkai Sun, Sanguo Zhang, Shuangge Ma:
Prediction Consistency Regularization for Learning with Noise Labels Based on Contrastive Clustering. Entropy 26(4): 308 (2024) - [j71]Yuanxing Chen, Qingzhao Zhang, Shuangge Ma, Kuangnan Fang:
Heterogeneity-aware Clustered Distributed Learning for Multi-source Data Analysis. J. Mach. Learn. Res. 25: 211:1-211:60 (2024) - [j70]Xing Qin, Jianhua Hu, Shuangge Ma, Mengyun Wu:
Estimation of multiple networks with common structures in heterogeneous subgroups. J. Multivar. Anal. 202: 105298 (2024) - [j69]Yang Li, Xiaonan Ren, Haochen Yu, Tao Sun, Shuangge Ma:
A penalized integrative deep neural network for variable selection among multiple omics datasets. Quant. Biol. 12(3): 313-323 (2024) - [i1]Tong Wang, Jian Huang, Shuangge Ma:
Penalized Generative Variable Selection. CoRR abs/2402.16661 (2024) - 2023
- [j68]Shuangge Ma
:
Editorial. Briefings Bioinform. 24(4) (2023) - [j67]Feifei Wang, Dongzuo Liang, Yang Li, Shuangge Ma:
Prior information-assisted integrative analysis of multiple datasets. Bioinform. 39(8) (2023) - [j66]Rui Ren, Kuangnan Fang, Qingzhao Zhang, Shuangge Ma:
FunctanSNP: an R package for functional analysis of dense SNP data (with interactions). Bioinform. 39(12) (2023) - [j65]Wei Xiong, Yaxian Chen, Shuangge Ma:
Unified model-free interaction screening via CV-entropy filter. Comput. Stat. Data Anal. 180: 107684 (2023) - [j64]Shuangge Ma, Martina Mittlböck, F. Javier Rubio, Catherine C. Liu:
2nd special issue on BIOSTATISTICS. Comput. Stat. Data Anal. 181: 107681 (2023) - [j63]Weijuan Liang, Qingzhao Zhang, Shuangge Ma:
Locally sparse quantile estimation for a partially functional interaction model. Comput. Stat. Data Anal. 186: 107782 (2023) - [j62]Fei Zhou, Jie Ren, Shuangge Ma, Cen Wu:
The Bayesian regularized quantile varying coefficient model. Comput. Stat. Data Anal. 187: 107808 (2023) - [j61]Yang Li, Dongzuo Liang, Shuangge Ma, Chenjin Ma:
Spatio-temporally smoothed deep survival neural network. J. Biomed. Informatics 137: 104255 (2023) - [j60]Shunqin Zhang, Sanguo Zhang, Huangdi Yi, Shuangge Ma:
Aligned deep neural network for integrative analysis with high-dimensional input. J. Biomed. Informatics 144: 104434 (2023) - [j59]Xiao Zhang, Xingjie Shi, Yiming Liu, Xu Liu, Shuangge Ma:
A General Framework for Identifying Hierarchical Interactions and Its Application to Genomics Data. J. Comput. Graph. Stat. 32(3): 873-883 (2023) - [j58]Han Yan, Sanguo Zhang, Shuangge Ma:
Hierarchy-assisted gene expression regulatory network analysis. Stat. Anal. Data Min. 16(3): 272-294 (2023) - 2022
- [j57]Chenjin Ma, Mengyun Wu, Shuangge Ma:
Analysis of cancer omics data: a selective review of statistical techniques. Briefings Bioinform. 23(2) (2022) - [j56]Jiping Wang, Hongmin Liang, Qingzhao Zhang, Shuangge Ma:
Replicability in cancer omics data analysis: measures and empirical explorations. Briefings Bioinform. 23(5) (2022) - [j55]Yang Li, Shaodong Xu, Shuangge Ma, Mengyun Wu:
Network-based cancer heterogeneity analysis incorporating multi-view of prior information. Bioinform. 38(10): 2855-2862 (2022) - [j54]Kuangnan Fang, Rui Ren, Qingzhao Zhang, Shuangge Ma:
iSFun: an R package for integrative dimension reduction analysis. Bioinform. 38(11): 3134-3135 (2022) - [j53]Xiaoyan Wang, Hongduo Liu, Shuangge Ma:
GEInfo: an R package for gene-environment interaction analysis incorporating prior information. Bioinform. 38(11): 3139-3140 (2022) - [j52]Mengque Liu, Xia Zou, Jiyin Chen, Shuangge Ma:
Comparative Analysis of Social Support in Online Health Communities Using a Word Co-Occurrence Network Analysis Approach. Entropy 24(2): 174 (2022) - [j51]Mengque Liu, Xinyan Fan, Shuangge Ma:
A Linguistic Analysis of News Coverage of E-Healthcare in China with a Heterogeneous Graphical Model. Entropy 24(11): 1557 (2022) - [j50]Kuangnan Fang, Yuanxing Chen, Shuangge Ma, Qingzhao Zhang:
Biclustering analysis of functionals via penalized fusion. J. Multivar. Anal. 189: 104874 (2022) - [j49]Jiamin Liu, Shuangge Ma, Wangli Xu, Liping Zhu:
A generalized Wilcoxon-Mann-Whitney type test for multivariate data through pairwise distance. J. Multivar. Anal. 190: 104946 (2022) - [j48]Xiaochen Zhang, Qingzhao Zhang, Shuangge Ma, Kuangnan Fang:
Subgroup analysis for high-dimensional functional regression. J. Multivar. Anal. 192: 105100 (2022) - [j47]Cunjie Lin, Nan Qiao, Wenli Zhang, Yang Li, Shuangge Ma:
Default risk prediction and feature extraction using a penalized deep neural network. Stat. Comput. 32(5): 76 (2022) - [j46]Mengque Liu, Qingzhao Zhang, Shuangge Ma:
A tree-based gene-environment interaction analysis with rare features. Stat. Anal. Data Min. 15(5): 648-674 (2022) - 2021
- [j45]Mengyun Wu, Huangdi Yi, Shuangge Ma:
Vertical integration methods for gene expression data analysis. Briefings Bioinform. 22(3) (2021) - [j44]Mingyang Ren, Sanguo Zhang, Qingzhao Zhang, Shuangge Ma:
HeteroGGM: an R package for Gaussian graphical model-based heterogeneity analysis. Bioinform. 37(18): 3073-3074 (2021) - [j43]Mengyun Wu, Xing Qin, Shuangge Ma:
GEInter: an R package for robust gene-environment interaction analysis. Bioinform. 37(20): 3691-3692 (2021) - [j42]Xinyan Fan, Qingzhao Zhang, Shuangge Ma, Kuangnan Fang:
Conditional score matching for high-dimensional partial graphical models. Comput. Stat. Data Anal. 153: 107066 (2021) - [j41]Qingzhao Zhang, Shuangge Ma, Yuan Huang:
Promote sign consistency in the joint estimation of precision matrices. Comput. Stat. Data Anal. 159: 107210 (2021) - [j40]Weijuan Liang, Shuangge Ma, Cunjie Lin:
Marginal false discovery rate for a penalized transformation survival model. Comput. Stat. Data Anal. 160: 107232 (2021) - [j39]Sneha Jadhav, Shuangge Ma:
An association test for functional data based on Kendall's Tau. J. Multivar. Anal. 184: 104740 (2021) - 2020
- [j38]Sebastian J. Teran Hidalgo, Mengyun Wu, Shuangge Ma:
NCutYX: a package for clustering analysis of multilayer omics data. Bioinform. 36(6): 1976-1977 (2020) - [j37]Mengque Liu, Qingzhao Zhang, Kuangnan Fang, Shuangge Ma:
Structured analysis of the high-dimensional FMR model. Comput. Stat. Data Anal. 144: 106883 (2020) - [j36]Hao Mei, Yaqing Xu, Jiping Wang, Shuangge Ma:
Evaluation of Survival Outcomes of Endovascular Versus Open Aortic Repair for Abdominal Aortic Aneurysms with a Big Data Approach. Entropy 22(12): 1349 (2020)
2010 – 2019
- 2019
- [j35]Mengyun Wu, Shuangge Ma:
Robust genetic interaction analysis. Briefings Bioinform. 20(2): 624-637 (2019) - [j34]Shengmei He, Shuangge Ma, Wangli Xu:
A modified mean-variance feature-screening procedure for ultrahigh-dimensional discriminant analysis. Comput. Stat. Data Anal. 137: 155-169 (2019) - 2018
- [j33]Xingjie Shi, Yuan Huang, Jian Huang, Shuangge Ma:
A Forward and Backward Stagewise algorithm for nonconvex loss functions with adaptive Lasso. Comput. Stat. Data Anal. 124: 235-251 (2018) - [j32]Kuangnan Fang, Xinyan Fan, Qingzhao Zhang, Shuangge Ma:
Integrative sparse principal component analysis. J. Multivar. Anal. 166: 1-16 (2018) - [j31]Cen Wu, Qingzhao Zhang, Yu Jiang, Shuangge Ma:
Robust network-based analysis of the associations between (epi)genetic measurements. J. Multivar. Anal. 168: 119-130 (2018) - 2017
- [j30]Tao Yu, Jialiang Li, Shuangge Ma:
Accounting for clinical covariates and interactions in ranking genomic markers using ROC. Commun. Stat. Simul. Comput. 46(5): 3735-3755 (2017) - 2016
- [j29]Jin Liu, Xiang Wan, Shuangge Ma, Can Yang:
EPS: an empirical Bayes approach to integrating pleiotropy and tissue-specific information for prioritizing risk genes. Bioinform. 32(12): 1856-1864 (2016) - [j28]Xiaonan Hu, Wei Zhang, Sanguo Zhang, Shuangge Ma, Qizhai Li:
Group-combined P-values with applications to genetic association studies. Bioinform. 32(18): 2737-2743 (2016) - [j27]Kuangnan Fang, Xiaoyan Wang, Ben-Chang Shia, Shuangge Ma:
Identification of proportionality structure with two-part models using penalization. Comput. Stat. Data Anal. 99: 12-24 (2016) - [j26]Yang Li, Yichen Qin, Limin Wang, Jiaxu Chen, Shuangge Ma:
Grouped Variable Selection Using Area under the ROC with Imbalanced Data. Commun. Stat. Simul. Comput. 45(4): 1268-1280 (2016) - [j25]Lei Qin, Shuangge Ma, Jung-Chen Lin, Ben-Chang Shia:
Lasso Regression Based on Empirical Mode Decomposition. Commun. Stat. Simul. Comput. 45(4): 1281-1294 (2016) - 2015
- [j24]Qing Zhao, Xingjie Shi, Yang Xie, Jian Huang, Ben-Chang Shia, Shuangge Ma:
Combining multidimensional genomic measurements for predicting cancer prognosis: observations from TCGA. Briefings Bioinform. 16(2): 291-303 (2015) - [j23]Xingjie Shi, Huangdi Yi, Shuangge Ma:
Measures for the degree of overlap of gene signatures and applications to TCGA. Briefings Bioinform. 16(5): 735-744 (2015) - [j22]Cen Wu, Shuangge Ma:
A selective review of robust variable selection with applications in bioinformatics. Briefings Bioinform. 16(5): 873-883 (2015) - [j21]Xingjie Shi, Qing Zhao, Jian Huang, Yang Xie, Shuangge Ma:
Deciphering the associations between gene expression and copy number alteration using a sparse double Laplacian shrinkage approach. Bioinform. 31(24): 3977-3983 (2015) - 2014
- [j20]Xingjie Shi, Shihao Shen, Jin Liu, Jian Huang, Yong Zhou, Shuangge Ma:
Similarity of markers identified from cancer gene expression studies: observations from GEO. Briefings Bioinform. 15(5): 671-684 (2014) - 2012
- [j19]Tao Yu, Jialiang Li, Shuangge Ma:
Adjusting confounders in ranking biomarkers: a model-based ROC approach. Briefings Bioinform. 13(5): 513-523 (2012) - [j18]Rui Song, Jian Huang, Shuangge Ma:
Integrative prescreening in analysis of multiple cancer genomic studies. BMC Bioinform. 13: 168 (2012) - [j17]Shuangge Ma, Ying Dai, Jian Huang, Yang Xie:
Identification of breast cancer prognosis markers via integrative analysis. Comput. Stat. Data Anal. 56(9): 2718-2728 (2012) - 2011
- [j16]Shuangge Ma, Xiao Song:
Ranking prognosis markers in cancer genomic studies. Briefings Bioinform. 12(1): 33-40 (2011) - [j15]Shuangge Ma, Ying Dai:
Principal component analysis based methods in bioinformatics studies. Briefings Bioinform. 12(6): 714-722 (2011) - [j14]Ben-Chang Shia, Jianping Zhu, Kuangnan Fang, Shuangge Ma:
Fuzzy Canonical Discriminant Analysis: Theory and Practice. Commun. Stat. Simul. Comput. 40(10): 1526-1539 (2011) - 2010
- [j13]Shuangge Ma, Jian Huang, Mingyu Shi, Yang Li, Ben-Chang Shia:
Semiparametric prognosis models in genomic studies. Briefings Bioinform. 11(4): 385-393 (2010) - [j12]Shuangge Ma, Yawei Zhang, Jian Huang, Xuesong Han, Theodore Holford, Qing Lan, Nathaniel Rothman, Peter Boyle, Tongzhang Zheng:
Identification of non-Hodgkin's lymphoma prognosis signatures using the CTGDR method. Bioinform. 26(1): 15-21 (2010) - [j11]Shuangge Ma, Michael R. Kosorok:
Detection of gene pathways with predictive power for breast cancer prognosis. BMC Bioinform. 11: 1 (2010) - [j10]Shuangge Ma, Mingyu Shi, Yang Li, Danhui Yi, Ben-Chang Shia:
Incorporating gene co-expression network in identification of cancer prognosis markers. BMC Bioinform. 11: 271 (2010)
2000 – 2009
- 2009
- [j9]Shuangge Ma, Michael R. Kosorok:
Identification of differential gene pathways with principal component analysis. Bioinform. 25(7): 882-889 (2009) - [j8]Shuangge Ma, Jian Huang:
Regularized gene selection in cancer microarray meta-analysis. BMC Bioinform. 10 (2009) - [c1]Nam Tran, Pedro Alves, Shuangge Ma, Michael Krauthammer:
Enriching PubMed Related Article Search with Sentence Level Co-citations. AMIA 2009 - 2008
- [j7]Shuangge Ma, Jian Huang:
Penalized feature selection and classification in bioinformatics. Briefings Bioinform. 9(5): 392-403 (2008) - 2007
- [j6]Shuangge Ma, Jian Huang:
Clustering threshold gradient descent regularization: with applications to microarray studies. Bioinform. 23(4): 466-472 (2007) - [j5]Shuangge Ma, Jian Huang:
Additive risk survival model with microarray data. BMC Bioinform. 8 (2007) - [j4]Shuangge Ma, Xiao Song, Jian Huang:
Supervised group Lasso with applications to microarray data analysis. BMC Bioinform. 8 (2007) - 2006
- [j3]Shuangge Ma, Xiao Song, Jian Huang:
Regularized binormal ROC method in disease classificationusing microarray data. BMC Bioinform. 7: 253 (2006) - [j2]Shuangge Ma:
Empirical study of supervised gene screening. BMC Bioinform. 7: 537 (2006) - 2005
- [j1]Shuangge Ma, Jian Huang:
Regularized ROC method for disease classification and biomarker selection with microarray data. Bioinform. 21(24): 4356-4362 (2005)
Coauthor Index
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