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2020 – today
- 2025
[j38]Manuel Lafond
, Vincent Moulton:
Path partitions of phylogenetic networks. Theor. Comput. Sci. 1024: 114907 (2025)- 2024
- [j37]Alitzel López Sánchez, Manuel Lafond:
Predicting horizontal gene transfers with perfect transfer networks. Algorithms Mol. Biol. 19(1): 6 (2024) - [j36]Kaari Landry, Olivier Tremblay Savard, Manuel Lafond:
A Fixed-Parameter Tractable Algorithm for Finding Agreement Cherry-Reduced Subnetworks in Level-1 Orchard Networks. J. Comput. Biol. 31(4): 360-379 (2024) - [j35]Reza Kalhor, Guillaume Beslon, Manuel Lafond, Céline Scornavacca:
A Rigorous Framework to Classify the Postduplication Fate of Paralogous Genes. J. Comput. Biol. 31(9): 815-833 (2024) - [j34]Manuel Lafond:
Improved kernelization and fixed-parameter algorithms for bicluster editing. J. Comb. Optim. 47(5): 90 (2024) - [c42]Alitzel López Sánchez, Manuel Lafond:
Galled Perfect Transfer Networks. RECOMB-CG 2024: 24-43 - [c41]Riccardo Dondi, Manuel Lafond:
On the Complexity of Temporal Arborescence Reconfiguration. SAND 2024: 10:1-10:15 - [c40]Bertrand Marchand, Nadia Tahiri, Olivier Tremblay Savard, Manuel Lafond:
Finding Maximum Common Contractions Between Phylogenetic Networks. WABI 2024: 16:1-16:24 - [c39]Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, Manuel Lafond:
The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees. WABI 2024: 20:1-20:21 - [i35]Bertrand Marchand, Yoann Anselmetti, Manuel Lafond, Aïda Ouangraoua:
Median and Small Parsimony Problems on RNA trees. CoRR abs/2402.03455 (2024) - [i34]Bertrand Marchand, Nadia Tahiri, Olivier Tremblay Savard, Manuel Lafond:
Finding Maximum Common Contractions Between Phylogenetic Networks. CoRR abs/2405.16713 (2024) - [i33]Max Dupré la Tour, Manuel Lafond, Ndiamé Ndiaye, Adrian Vetta:
k-Leaf Powers Cannot be Characterized by a Finite Set of Forbidden Induced Subgraphs for k ≥ 5. CoRR abs/2407.02412 (2024) - [i32]Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, Manuel Lafond:
The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees. CoRR abs/2407.06367 (2024) - [i31]Manuel Lafond, Vincent Moulton:
Path Partitions of Phylogenetic Networks. CoRR abs/2408.06489 (2024) - [i30]Alitzel López Sánchez, Manuel Lafond:
Galled Perfect Transfer Networks. CoRR abs/2409.03935 (2024) - 2023
- [j33]Riccardo Dondi, Manuel Lafond:
On the Tractability of Covering a Graph with 2-Clubs. Algorithmica 85(4): 992-1028 (2023) - [j32]David Schaller, Tom Hartmann, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth:
Relative timing information and orthology in evolutionary scenarios. Algorithms Mol. Biol. 18(1): 16 (2023) - [j31]Andres Pastrana-Cruz, Manuel Lafond:
A lightweight semi-centralized strategy for the massive parallelization of branching algorithms. Parallel Comput. 116: 103024 (2023) - [j30]Manuel Lafond:
Recognizing k-Leaf Powers in Polynomial Time, for Constant k. ACM Trans. Algorithms 19(4): 35:1-35:35 (2023) - [j29]Kaari Landry, Aivee Teodocio, Manuel Lafond, Olivier Tremblay Savard:
Defining Phylogenetic Network Distances Using Cherry Operations. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1654-1666 (2023) - [c38]Manuel Lafond, Wenfeng Lai, Adiesha Liyanage, Binhai Zhu:
The Longest Subsequence-Repeated Subsequence Problem. COCOA (1) 2023: 446-458 - [c37]Riccardo Dondi, Manuel Lafond:
An FPT Algorithm for Temporal Graph Untangling. IPEC 2023: 12:1-12:16 - [c36]Manuel Lafond, Weidong Luo:
Preprocessing complexity for some graph problems parameterized by structural parameters. LAGOS 2023: 130-139 - [c35]Manuel Lafond, Weidong Luo:
Parameterized Complexity of Domination Problems Using Restricted Modular Partitions. MFCS 2023: 61:1-61:14 - [c34]Reza Kalhor, Guillaume Beslon, Manuel Lafond, Céline Scornavacca:
Classifying the Post-duplication Fate of Paralogous Genes. RECOMB-CG 2023: 1-18 - [c33]Manuel Lafond, Anne Bergeron, Krister M. Swenson:
Two Strikes Against the Phage Recombination Problem. RECOMB-CG 2023: 68-83 - [c32]Kaari Landry, Olivier Tremblay Savard, Manuel Lafond:
Finding Agreement Cherry-Reduced Subnetworks in Level-1 Networks. RECOMB-CG 2023: 179-195 - [i29]Sergey Bereg, Yuya Higashikawa, Naoki Katoh, Manuel Lafond, Yuki Tokuni, Binhai Zhu:
The Two-Squirrel Problem and Its Relatives. CoRR abs/2302.05937 (2023) - [i28]Manuel Lafond, Wenfeng Lai, Adiesha Liyanage, Binhai Zhu:
The Longest Subsequence-Repeated Subsequence Problem. CoRR abs/2304.06862 (2023) - [i27]Kaari Landry, Olivier Tremblay Savard, Manuel Lafond:
Finding agreement cherry-reduced subnetworks in level-1 networks. CoRR abs/2305.00033 (2023) - [i26]Andres Pastrana-Cruz, Manuel Lafond:
A lightweight semi-centralized strategy for the massive parallelization of branching algorithms. CoRR abs/2305.09117 (2023) - [i25]Manuel Lafond, Weidong Luo:
Preprocessing Complexity for Some Graph Problems Parameterized by Structural Parameters. CoRR abs/2306.12655 (2023) - [i24]Riccardo Dondi, Manuel Lafond:
An FTP Algorithm for Temporal Graph Untangling. CoRR abs/2307.00786 (2023) - [i23]Manuel Lafond, Weidong Luo:
Parameterized Complexity of Domination Problems Using Restricted Modular Partitions. CoRR abs/2307.02021 (2023) - [i22]Alitzel López Sánchez, Manuel Lafond:
Predicting Horizontal Gene Transfers with Perfect Transfer Networks. CoRR abs/2312.02962 (2023) - 2022
- [j28]Manuel Lafond, Ben Seamone, Rezvan Sherkati:
Further results on Hendry's Conjecture. Discret. Math. Theor. Comput. Sci. 24(2) (2022) - [j27]Manuel Lafond, Binhai Zhu, Peng Zou:
Computing the Tandem Duplication Distance is NP-Hard. SIAM J. Discret. Math. 36(1): 64-91 (2022) - [j26]Manuel Lafond:
Graph Algorithms and Graph Theory-Symmetry Special Issue. Symmetry 14(8): 1748 (2022) - [c31]Manuel Lafond:
How Brokers Can Optimally Abuse Traders. FUN 2022: 18:1-18:19 - [c30]Manuel Lafond, Adiesha Liyanage, Binhai Zhu, Peng Zou:
The Complexity of Finding Common Partitions of Genomes with Predefined Block Sizes. RECOMB-CG 2022: 105-123 - [c29]Manuel Lafond:
Recognizing <italic>k</italic>-leaf powers in polynomial time, for constant <italic>k</italic>. SODA 2022: 1384-1410 - [c28]Alitzel López Sánchez, Manuel Lafond:
Predicting Horizontal Gene Transfers with Perfect Transfer Networks. WABI 2022: 3:1-3:22 - [i21]David Schaller, Tom Hartmann, Manuel Lafond, Nicolas Wieseke, Marc Hellmuth, Peter F. Stadler:
Relative Timing Information and Orthology in Evolutionary Scenarios. CoRR abs/2212.02201 (2022) - 2021
- [j25]Yoann Anselmetti, Nadia El-Mabrouk, Manuel Lafond, Aïda Ouangraoua:
Gene tree and species tree reconciliation with endosymbiotic gene transfer. Bioinform. 37(Supplement): 120-132 (2021) - [j24]Annie Chateau, Tom Davot, Manuel Lafond:
Efficient assembly consensus algorithms for divergent contig sets. Comput. Biol. Chem. 93: 107516 (2021) - [j23]Alitzel López Sánchez, Manuel Lafond:
Colorful orthology clustering in bounded-degree similarity graphs. J. Bioinform. Comput. Biol. 19(6): 2140010:1-2140010:15 (2021) - [j22]Pierre Charbit, Gena Hahn, Marcin Kaminski, Manuel Lafond, Nicolas Lichiardopol, Reza Naserasr, Ben Seamone, Rezvan Sherkati:
Edge clique covers in graphs with independence number two. J. Graph Theory 97(2): 324-339 (2021) - [j21]Jurek Czyzowicz, Konstantinos Georgiou, Ryan Killick, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende:
Time-energy tradeoffs for evacuation by two robots in the wireless model. Theor. Comput. Sci. 852: 61-72 (2021) - [c27]Kaari Landry, Aivee Teodocio, Manuel Lafond, Olivier Tremblay Savard:
Novel Phylogenetic Network Distances Based on Cherry Picking. AlCoB 2021: 57-81 - [c26]Manuel Lafond, Binhai Zhu:
Permutation-Constrained Common String Partitions with Applications. SPIRE 2021: 47-60 - [i20]Manuel Lafond:
Recognizing k-leaf powers in polynomial time, for constant k. CoRR abs/2110.15421 (2021) - 2020
- [j20]Stefan Dobrev, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny, Ladislav Stacho:
Weak Coverage of a Rectangular Barrier. Algorithmica 82(4): 721-746 (2020) - [j19]Aniket C. Mane, Manuel Lafond, Pedro Cipriano Feijão, Cédric Chauve:
The distance and median problems in the single-cut-or-join model with single-gene duplications. Algorithms Mol. Biol. 15(1): 8 (2020) - [j18]Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos:
Evolution through segmental duplications and losses: a Super-Reconciliation approach. Algorithms Mol. Biol. 15(1): 12 (2020) - [j17]Manuel Lafond, Marc Hellmuth:
Reconstruction of time-consistent species trees. Algorithms Mol. Biol. 15(1): 16 (2020) - [j16]Samuel Briand, Christophe Dessimoz, Nadia El-Mabrouk, Manuel Lafond, Gabriela Lobinska:
A generalized Robinson-Foulds distance for labeled trees. BMC Genom. 21(S-10) (2020) - [j15]Gennaro Cordasco, Luisa Gargano, Manuel Lafond, Lata Narayanan, Adele A. Rescigno, Ugo Vaccaro, Kangkang Wu:
Whom to befriend to influence people. Theor. Comput. Sci. 810: 26-42 (2020) - [c25]Manuel Lafond:
Even Better Fixed-Parameter Algorithms for Bicluster Editing. COCOON 2020: 578-590 - [c24]Manuel Lafond, Binhai Zhu, Peng Zou:
Genomic Problems Involving Copy Number Profiles: Complexity and Algorithms. CPM 2020: 22:1-22:15 - [c23]Manuel Lafond, Binhai Zhu, Peng Zou:
The Tandem Duplication Distance Is NP-Hard. STACS 2020: 15:1-15:15 - [i19]Manuel Lafond, Binhai Zhu, Peng Zou:
Genomic Problems Involving Copy Number Profiles: Complexity and Algorithms. CoRR abs/2002.04778 (2020) - [i18]Garance Cordonnier, Manuel Lafond:
Comparing copy-number profiles under multi-copy amplifications and deletions. CoRR abs/2002.11271 (2020) - [i17]Manuel Lafond, Ben Seamone, Rezvan Sherkati:
Further results on Hendry's Conjecture. CoRR abs/2007.07464 (2020) - [i16]David Schaller, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth:
Indirect Identification of Horizontal Gene Transfer. CoRR abs/2012.08897 (2020)
2010 – 2019
- 2019
- [j14]Riccardo Dondi, Manuel Lafond, Céline Scornavacca:
Reconciling multiple genes trees via segmental duplications and losses. Algorithms Mol. Biol. 14(1): 7:1-7:19 (2019) - [j13]Nina Luhmann, Manuel Lafond, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve:
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1364-1373 (2019) - [j12]Manuel Lafond, Nadia El-Mabrouk, Katharina T. Huber, Vincent Moulton:
The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics. Theor. Comput. Sci. 760: 15-34 (2019) - [j11]Manuel Lafond, Céline Scornavacca:
On the Weighted Quartet Consensus problem. Theor. Comput. Sci. 769: 1-17 (2019) - [c22]Riccardo Dondi, Manuel Lafond:
On the Tractability of Covering a Graph with 2-Clubs. FCT 2019: 243-257 - [c21]Jurek Czyzowicz, Konstantinos Georgiou, Ryan Killick, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende:
Energy Consumption of Group Search on a Line. ICALP 2019: 137:1-137:15 - [c20]Jurek Czyzowicz, Konstantinos Georgiou, Ryan Killick, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende:
Time-Energy Tradeoffs for Evacuation by Two Robots in the Wireless Model. SIROCCO 2019: 185-199 - [c19]Anne-Laure Ehresmann, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny:
Distributed Pattern Formation in a Ring. SIROCCO 2019: 215-229 - [i15]Jurek Czyzowicz, Konstantinos Georgiou, Ryan Killick, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende:
Energy Consumption of Group Search on a Line. CoRR abs/1904.09714 (2019) - [i14]Jurek Czyzowicz, Konstantinos Georgiou, Ryan Killick, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende:
Time-Energy Tradeoffs for Evacuation by Two Robots in the Wireless Model. CoRR abs/1905.06783 (2019) - [i13]Anne-Laure Ehresmann, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny:
Distributed Pattern Formation in a Ring. CoRR abs/1905.08856 (2019) - [i12]Manuel Lafond, Binhai Zhu, Peng Zou:
The Tandem Duplication Distance is NP-hard. CoRR abs/1906.05266 (2019) - [i11]Manuel Lafond, Marc Hellmuth:
Reconstruction of time-consistent species trees. CoRR abs/1910.13123 (2019) - 2018
- [j10]Manuel Lafond, Mona Meghdari Miardan, David Sankoff:
Accurate prediction of orthologs in the presence of divergence after duplication. Bioinform. 34(13): i366-i375 (2018) - [j9]Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua:
Gene Tree Construction and Correction Using SuperTree and Reconciliation. IEEE ACM Trans. Comput. Biol. Bioinform. 15(5): 1560-1570 (2018) - [c18]Huda Chuangpishit, Manuel Lafond, Lata Narayanan:
Editing Graphs to Satisfy Diversity Requirements. COCOA 2018: 154-168 - [c17]Manuel Lafond:
The complexity of speedrunning video games. FUN 2018: 27:1-27:19 - [c16]Danny Krizanc, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende:
Satisfying Neighbor Preferences on a Circle. LATIN 2018: 727-740 - [c15]Aniket C. Mane, Manuel Lafond, Pedro Feijão, Cédric Chauve:
The Rooted SCJ Median with Single Gene Duplications. RECOMB-CG 2018: 28-48 - [c14]Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos:
Reconstructing the History of Syntenies Through Super-Reconciliation. RECOMB-CG 2018: 179-195 - [c13]Riccardo Dondi, Manuel Lafond, Céline Scornavacca:
Reconciling Multiple Genes Trees via Segmental Duplications and Losses. WABI 2018: 5:1-5:16 - [i10]Manuel Lafond, Nadia El-Mabrouk, Katharina T. Huber, Vincent Moulton:
The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics. CoRR abs/1803.05866 (2018) - [i9]Riccardo Dondi, Manuel Lafond, Céline Scornavacca:
Reconciling Multiple Genes Trees via Segmental Duplications and Losses. CoRR abs/1806.03988 (2018) - 2017
- [j8]Riccardo Dondi, Manuel Lafond, Nadia El-Mabrouk:
Approximating the correction of weighted and unweighted orthology and paralogy relations. Algorithms Mol. Biol. 12(1): 4:1-4:15 (2017) - [j7]Esaie Kuitche, Manuel Lafond, Aïda Ouangraoua:
Reconstructing protein and gene phylogenies using reconciliation and soft-clustering. J. Bioinform. Comput. Biol. 15(6): 1740007:1-1740007:25 (2017) - [j6]Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca:
Rearrangement moves on rooted phylogenetic networks. PLoS Comput. Biol. 13(8) (2017) - [c12]Stefan Dobrev, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende, Ladislav Stacho:
Weak Coverage of a Rectangular Barrier. CIAC 2017: 196-208 - [c11]Manuel Lafond, Céline Scornavacca:
On the Weighted Quartet Consensus Problem. CPM 2017: 28:1-28:18 - [c10]Stefan Dobrev, Manuel Lafond, Lata Narayanan, Jaroslav Opatrny:
Optimal Local Buffer Management for Information Gathering with Adversarial Traffic. SPAA 2017: 265-274 - [c9]Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller:
Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract). SPIRE 2017: 129-143 - [c8]Manuel Lafond:
On Strongly Chordal Graphs That Are Not Leaf Powers. WG 2017: 386-398 - [i8]Stefan Dobrev, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny, Ladislav Stacho:
Weak Coverage of a Rectangular Barrier. CoRR abs/1701.07294 (2017) - [i7]Manuel Lafond:
On strongly chordal graph that are not leaf powers. CoRR abs/1703.08018 (2017) - [i6]Mark Jones, Manuel Lafond, Céline Scornavacca:
Consistency of orthology and paralogy constraints in the presence of gene transfers. CoRR abs/1705.01240 (2017) - [i5]Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller:
Constructing a Consensus Phylogeny from a Leaf-Removal Distance. CoRR abs/1705.05295 (2017) - 2016
- [j5]Manuel Lafond, Riccardo Dondi, Nadia El-Mabrouk:
The link between orthology relations and gene trees: a correction perspective. Algorithms Mol. Biol. 11: 4 (2016) - [c7]Manuel Lafond, Emmanuel Noutahi, Nadia El-Mabrouk:
Efficient Non-Binary Gene Tree Resolution with Weighted Reconciliation Cost. CPM 2016: 14:1-14:12 - [c6]Manuel Lafond, Lata Narayanan, Kangkang Wu:
Whom to Befriend to Influence People. SIROCCO 2016: 340-357 - [c5]Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond:
Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results. WABI 2016: 121-136 - [i4]Manuel Lafond, Céline Scornavacca:
On the Weighted Quartet Consensus problem. CoRR abs/1610.00505 (2016) - [i3]Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua:
Gene Tree Construction and Correction using SuperTree and Reconciliation. CoRR abs/1610.05068 (2016) - [i2]Gennaro Cordasco, Luisa Gargano, Manuel Lafond, Lata Narayanan, Adele A. Rescigno, Ugo Vaccaro, Kangkang Wu:
Whom to befriend to influence people. CoRR abs/1611.08687 (2016) - 2015
- [j4]Manuel Lafond, Aïda Ouangraoua, Nadia El-Mabrouk:
Reconstructing a SuperGeneTree minimizing reconciliation. BMC Bioinform. 16(S14): S4 (2015) - [j3]Manuel Lafond, Ben Seamone:
Hamiltonian Chordal Graphs are not Cycle Extendable. SIAM J. Discret. Math. 29(2): 877-887 (2015) - [c4]Manuel Lafond, Nadia El-Mabrouk:
Orthology Relation and Gene Tree Correction: Complexity Results. WABI 2015: 66-79 - 2014
- [j2]Manuel Lafond, Cédric Chauve, Riccardo Dondi, Nadia El-Mabrouk:
Polytomy refinement for the correction of dubious duplications in gene trees. Bioinform. 30(17): 519-526 (2014) - 2013
- [j1]Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk:
Gene tree correction guided by orthology. BMC Bioinform. 14(S-15): S5 (2013) - [c3]Esma Aïmeur, Manuel Lafond:
The Scourge of Internet Personal Data Collection. ARES 2013: 821-828 - [p1]Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk:
Error Detection and Correction of Gene Trees. Models and Algorithms for Genome Evolution 2013: 261-285 - [i1]Manuel Lafond, Ben Seamone:
Hamiltonian chordal graphs are not cycle extendible. CoRR abs/1311.5863 (2013) - 2012
- [c2]Manuel Lafond, Pierre-Olivier Brosseau, Esma Aïmeur:
Privacy invasion in business environments. PST 2012: 221-224 - [c1]Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk:
An Optimal Reconciliation Algorithm for Gene Trees with Polytomies. WABI 2012: 106-122
Coauthor Index
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