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2020 – today
- 2022
[j17]Tom Davot
, Annie Chateau, Rohan Fossé, Rodolphe Giroudeau, Mathias Weller:
On a greedy approach for genome scaffolding. Algorithms Mol. Biol. 17(1): 16 (2022)- [j16]Clément Agret, Annie Chateau, Gaëtan Droc, Gautier Sarah, Manuel Ruiz, Alban Mancheron:
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes. J. Open Source Softw. 7(80): 4363 (2022) - 2021
- [j15]Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller, Dorine Tabary:
Producing Genomic Sequences after Genome Scaffolding with Ambiguous Paths: Complexity, Approximation and Lower Bounds. Algorithmica 83(7): 2063-2095 (2021) - [j14]Yasmine Mansour, Annie Chateau, Anna-Sophie Fiston-Lavier:
BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes. BMC Bioinform. 22-S(6): 396 (2021) - [j13]Annie Chateau, Tom Davot, Manuel Lafond:
Efficient assembly consensus algorithms for divergent contig sets. Comput. Biol. Chem. 93: 107516 (2021) - [j12]Quentin Delorme, Rémy Costa, Yasmine Mansour, Anna-Sophie Fiston-Lavier, Annie Chateau:
Involving repetitive regions in scaffolding improvement. J. Bioinform. Comput. Biol. 19(6): 2140016:1-2140016:15 (2021) - [i2]Kleber Padovani de Souza, Roberto Xavier, André C. P. L. F. de Carvalho, Anna Reali, Annie Chateau, Ronnie Alves:
Towards a reinforcement learning de novo genome assembler. CoRR abs/2102.02649 (2021) - 2020
- [c23]Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller:
Linearizing Genomes: Exact Methods and Local Search. SOFSEM 2020: 505-518
2010 – 2019
- 2019
- [j11]Pijus Simonaitis, Annie Chateau, Krister M. Swenson:
A general framework for genome rearrangement with biological constraints. Algorithms Mol. Biol. 14(1): 15:1-15:14 (2019) - [j10]Kleber Padovani de Souza, João Carlos Setubal, André Carlos Ponce de Leon Ferreira de Carvalho, Guilherme Oliveira, Annie Chateau, Ronnie Alves:
Machine learning meets genome assembly. Briefings Bioinform. 20(6): 2116-2129 (2019) - [c22]Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller:
New Polynomial-Time Algorithm Around the Scaffolding Problem. AlCoB 2019: 25-38 - [c21]Pierre Cazals, Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller:
Power Edge Set and Zero Forcing Set Remain Difficult in Cubic Graphs. IWOCA 2019: 122-135 - [c20]Pijus Simonaitis, Annie Chateau, Krister M. Swenson:
Weighted Minimum-Length Rearrangement Scenarios. WABI 2019: 13:1-13:17 - [c19]Roberto Xavier, Kleber Padovani de Souza, Annie Chateau, Ronnie Alves:
Genome Assembly Using Reinforcement Learning. BSB 2019: 16-28 - 2018
- [j9]Mathias Weller, Annie Chateau, Clément Dallard, Rodolphe Giroudeau:
Scaffolding Problems Revisited: Complexity, Approximation and Fixed Parameter Tractable Algorithms, and Some Special Cases. Algorithmica 80(6): 1771-1803 (2018) - [j8]Mathias Weller, Annie Chateau, Rodolphe Giroudeau, Jean-Claude König, Valentin Pollet:
On residual approximation in solution extension problems. J. Comb. Optim. 36(4): 1195-1220 (2018) - [j7]Benoît Darties, Nicolas Champseix, Annie Chateau, Rodolphe Giroudeau, Mathias Weller:
Complexity and lowers bounds for Power Edge Set Problem. J. Discrete Algorithms 52-53: 70-91 (2018) - [c18]Dorine Tabary, Tom Davot, Mathias Weller, Annie Chateau, Rodolphe Giroudeau:
New Results About the Linearization of Scaffolds Sharing Repeated Contigs. COCOA 2018: 94-107 - [c17]Pijus Simonaitis, Annie Chateau, Krister M. Swenson:
A General Framework for Genome Rearrangement with Biological Constraints. RECOMB-CG 2018: 49-71 - [c16]Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller:
On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigs. RECOMB-CG 2018: 91-107 - [i1]Pijus Simonaitis, Annie Chateau, Krister M. Swenson:
A framework for cost-constrained genome rearrangement under Double Cut and Join. CoRR abs/1802.07515 (2018) - 2017
- [c15]Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller:
New Insights for Power Edge Set Problem. COCOA (1) 2017: 180-194 - [c14]Mathias Weller, Annie Chateau, Rodolphe Giroudeau:
On the Linearization of Scaffolds Sharing Repeated Contigs. COCOA (2) 2017: 509-517 - [c13]Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller:
Improved Complexity for Power Edge Set Problem. IWOCA 2017: 128-141 - 2016
- [j6]Sèverine Bérard, Annie Chateau, Nicolas Pompidor, Paul Guertin, Anne Bergeron, Krister M. Swenson:
Aligning the unalignable: bacteriophage whole genome alignments. BMC Bioinform. 17: 30 (2016) - [c12]Clément Dallard, Mathias Weller, Annie Chateau, Rodolphe Giroudeau:
Instance Guaranteed Ratio on Greedy Heuristic for Genome Scaffolding. COCOA 2016: 294-308 - [c11]Mathias Weller, Annie Chateau, Rodolphe Giroudeau, Jean-Claude König, Valentin Pollet:
On Residual Approximation in Solution Extension Problems. COCOA 2016: 463-476 - [c10]Adel Ferdjoukh, Eric Bourreau, Annie Chateau, Clémentine Nebut:
A Model-Driven Approach to Generate Relevant and Realistic Datasets. SEKE 2016: 105-109 - 2015
- [j5]Mathias Weller, Annie Chateau, Rodolphe Giroudeau:
Exact approaches for scaffolding. BMC Bioinform. 16(S14): S2 (2015) - [j4]Annie Chateau, Rodolphe Giroudeau:
A complexity and approximation framework for the maximization scaffolding problem. Theor. Comput. Sci. 595: 92-106 (2015) - [c9]Mathias Weller, Annie Chateau, Rodolphe Giroudeau:
On the Complexity of Scaffolding Problems: From Cliques to Sparse Graphs. COCOA 2015: 409-423 - [c8]Adel Ferdjoukh, Anne-Elisabeth Baert, Eric Bourreau, Annie Chateau, Remi Coletta, Clémentine Nebut:
Instantiation of Meta-models Constrained with OCL - A CSP Approach. MODELSWARD 2015: 213-222 - 2014
- [c7]Annie Chateau, Rodolphe Giroudeau:
Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem. AlCoB 2014: 47-58 - 2013
- [c6]Adel Ferdjoukh, Anne-Elisabeth Baert, Annie Chateau, Remi Coletta, Clémentine Nebut:
A CSP Approach for Metamodel Instantiation. ICTAI 2013: 1044-1051 - 2011
- [c5]Annie Chateau, Pierre Riou, Eric Rivals:
Approximate Common Intervals in Multiple Genome Comparison. BIBM 2011: 131-134
2000 – 2009
- 2009
- [j3]Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier:
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes. J. Comput. Biol. 16(10): 1287-1309 (2009) - 2008
- [c4]Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier:
Perfect DCJ Rearrangement. RECOMB-CG 2008: 158-169 - 2007
- [c3]Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cédric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette:
Exploring Genome Rearrangements using Virtual Hybridization. APBC 2007: 205-214 - 2006
- [j2]Annie Chateau, Malika More:
The ultra-weak Ash conjecture and some particular cases. Math. Log. Q. 52(1): 4-13 (2006) - [c2]Guillaume Blin, Annie Chateau, Cédric Chauve, Yannick Gingras:
Inferring Positional Homologs with Common Intervals of Sequences. Comparative Genomics 2006: 24-38 - 2004
- [j1]Annie Chateau:
On the complexity of decision using destinies in H-bounded structures. Theor. Comput. Sci. 322(1): 41-67 (2004) - [c1]Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cédric Chauve:
Reconstructing Ancestral Gene Orders Using Conserved Intervals. WABI 2004: 14-25 - 2003
- [b1]Annie Chateau:
Utilisation des destinées pour la décision et sa complexité dans le cas de formules à profondeur de quantification bornée sur des structures logiques finies et infinies. (Using Destinies for the Decision Problem of Sets of Bounded Quantifier Depth Sentences in Finite or Infinite Structures). University of Auvergne, Clermont-Ferrand, France, 2003
Coauthor Index
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last updated on 2024-10-07 21:24 CEST by the dblp team
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