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Christoph Dieterich
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2020 – today
- 2024
- [j21]Enio Gjerga, Matthias Dewenter, Thiago Britto-Borges, Johannes Grosso, Frank Stein, Jessica Eschenbach, Mandy Rettel, Johannes Backs, Christoph Dieterich:
Transverse aortic constriction multi-omics analysis uncovers pathophysiological cardiac molecular mechanisms. Database J. Biol. Databases Curation 2024 (2024) - [i1]Phillip Richter-Pechanski, Philipp Wiesenbach, Dominic M. Schwab, Christina Kiriakou, Nicolas Geis, Christoph Dieterich, Anette Frank:
Clinical information extraction for Low-resource languages with Few-shot learning using Pre-trained language models and Prompting. CoRR abs/2403.13369 (2024) - 2023
- [j20]Enio Gjerga, Isabel S. Naarmann-de Vries, Christoph Dieterich:
Characterizing alternative splicing effects on protein interaction networks with LINDA. Bioinform. 39(Supplement-1): 458-464 (2023) - [c15]Dagmar Krefting, Nico T. Mutters, Rüdiger Pryss, Martin Sedlmayr, Martin Boeker, Christoph Dieterich, Carolin Koll, Martina Mueller, Anna Slagman, Dagmar Waltemath, Antje Wulff, Sven Zenker:
Herding Cats in Pandemic Times - Towards Technological and Organizational Convergence of Heterogeneous Solutions for Investigating and Mastering the Pandemic in University Medical Centers. MedInfo 2023: 1271-1275 - [c14]Lea Michaelis, Rasim Atakan Poyraz, Michael Rusongoza Muzoora, Kerstin Gierend, Alexander Bartschke, Christoph Dieterich, Tim Johann, Dagmar Krefting, Dagmar Waltemath, Sylvia Thun:
Insights into the FAIRness of the German Network University Medicine: A Survey. MIE 2023: 741-742 - [c13]Phillip Richter-Pechanski, Philipp Wiesenbach, Dominic M. Schwab, Christina Kiriakou, Mingyang He, Nicolas A. Geis, Anette Frank, Christoph Dieterich:
Few-Shot and Prompt Training for Text Classification in German Doctor's Letters. MIE 2023: 819-820 - 2021
- [j19]Etienne Boileau, Janine Altmüller, Isabel S. Naarmann-de Vries, Christoph Dieterich:
A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover. Briefings Bioinform. 22(6) (2021) - [c12]Magdalena Smieszek, Aljoscha Kindermann, Ali Amr, Benjamin Meder, Christoph Dieterich:
An Apple Watch Dashboard for HiGHmed Heart Insufficency Patients. GMDS 2021: 146-155 - 2020
- [c11]Aljoscha Kindermann, Erik Tute, Sebastian Benda, Martin Löpprich, Phillip Richter-Pechanski, Christoph Dieterich:
Preliminary Analysis of Structured Reporting in the HiGHmed Use Case Cardiology: Challenges and Measures. GMDS 2020: 187-194
2010 – 2019
- 2019
- [j18]Tobias Jakobi, Alexey Uvarovskii, Christoph Dieterich:
circtools - a one-stop software solution for circular RNA research. Bioinform. 35(13): 2326-2328 (2019) - [j17]Alexey Uvarovskii, Isabel S. Naarmann-de Vries, Christoph Dieterich:
On the optimal design of metabolic RNA labeling experiments. PLoS Comput. Biol. 15(8) (2019) - [c10]Phillip Richter-Pechanski, Ali Amr, Hugo A. Katus, Christoph Dieterich:
Deep Learning Approaches Outperform Conventional Strategies in De-Identification of German Medical Reports. GMDS 2019: 101-109 - [c9]Aljoscha Kindermann, Ekaterina Stepanova, Hauke Hund, Nicolas Geis, Brandon Malone, Christoph Dieterich:
MedEx - Data Analytics for Medical Domain Experts in Real-Time. GMDS 2019: 142-149 - 2018
- [c8]Phillip Richter-Pechanski, Stefan Riezler, Christoph Dieterich:
De-Identification of German Medical Admission Notes. GMDS 2018: 165-169 - 2017
- [j16]Johannes T. Roehr, Christoph Dieterich, Knut Reinert:
Flexbar 3.0 - SIMD and multicore parallelization. Bioinform. 33(18): 2941-2942 (2017) - [j15]Alexey Uvarovskii, Christoph Dieterich:
pulseR: Versatile computational analysis of RNA turnover from metabolic labeling experiments. Bioinform. 33(20): 3305-3307 (2017) - [j14]Michael Piechotta, Emanuel Wyler, Uwe Ohler, Markus Landthaler, Christoph Dieterich:
JACUSA: site-specific identification of RNA editing events from replicate sequencing data. BMC Bioinform. 18(1): 7:1-7:15 (2017) - 2016
- [j13]Jun Cheng, Franziska Metge, Christoph Dieterich:
Specific identification and quantification of circular RNAs from sequencing data. Bioinform. 32(7): 1094-1096 (2016) - [j12]Tobias Jakobi, Lisa F. Czaja-Hasse, Richard Reinhardt, Christoph Dieterich:
Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts. Genom. Proteom. Bioinform. 14(4): 216-223 (2016) - 2015
- [j11]Kai Blin, Christoph Dieterich, Ricardo Wurmus, Nikolaus Rajewsky, Markus Landthaler, Altuna Akalin:
DoRiNA 2.0 - upgrading the doRiNA database of RNA interactions in post-transcriptional regulation. Nucleic Acids Res. 43(Database-Issue): 160-167 (2015) - 2014
- [j10]Eduardo G. Gusmão, Christoph Dieterich, Martin Zenke, Ivan G. Costa:
Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications. Bioinform. 30(22): 3143-3151 (2014) - 2013
- [j9]Michael Piechotta, Christoph Dieterich:
ACCUSA2: multi-purpose SNV calling enhanced by probabilistic integration of quality scores. Bioinform. 29(14): 1809-1810 (2013) - 2012
- [j8]Gerd Anders, Sebastian D. Mackowiak, Marvin Jens, Jonas Maaskola, Andreas Kuntzagk, Nikolaus Rajewsky, Markus Landthaler, Christoph Dieterich:
doRiNA: a database of RNA interactions in post-transcriptional regulation. Nucleic Acids Res. 40(Database-Issue): 180-186 (2012) - [c7]Eduardo G. Gusmão, Christoph Dieterich, Ivan G. Costa:
Prediction of Transcription Factor Binding Sites by Integrating DNase Digestion and Histone Modification. BSB 2012: 109-119 - 2010
- [j7]Sebastian Fröhler, Christoph Dieterich:
ACCUSA - accurate SNP calling on draft genomes. Bioinform. 26(10): 1364-1365 (2010)
2000 – 2009
- 2008
- [j6]Christian Rödelsperger, Christoph Dieterich:
Syntenator: Multiple gene order alignments with a gene-specific scoring function. Algorithms Mol. Biol. 3 (2008) - 2007
- [j5]Christoph Dieterich, M. W. Franz, Martin Vingron:
Developments in CORG: a gene-centric comparative genomics resource. Nucleic Acids Res. 35(Database-Issue): 32-35 (2007) - [j4]Christoph Dieterich, Waltraud Roeseler, Patrick Sobetzko, Ralf J. Sommer:
Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus. Nucleic Acids Res. 35(Database-Issue): 498-502 (2007) - [c6]Christian Rödelsperger, Christoph Dieterich:
Two Graph-based Approaches for Finding Cross-species Conserved Gene Orders. German Conference on Bioinformatics 2007: 163-173 - 2005
- [j3]Morris Michael, Christoph Dieterich, Martin Vingron:
SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors. Bioinform. 21(9): 2093-2094 (2005) - [j2]Davide Corà, Carl Herrmann, Christoph Dieterich, Ferdinando Di Cunto, Paolo Provero, Michele Caselle:
Ab initio identification of putative human transcription factor binding sites by comparative genomics. BMC Bioinform. 6: 110 (2005) - 2004
- [c5]Christoph Dieterich, Sven Rahmann, Martin Vingron:
Functional inference from non-random distributions of conserved predicted transcription factor binding sites. ISMB/ECCB (Supplement of Bioinformatics) 2004: 109-115 - [c4]Thomas Manke, Christoph Dieterich, Martin Vingron:
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome. Regulatory Genomics 2004: 14-21 - [c3]Morris Michael, Christoph Dieterich, Jens Stoye:
Suboptimal Local Alignments Across Multiple Scoring Schemes. WABI 2004: 99-110 - 2003
- [j1]Christoph Dieterich, Haiyan Wang, Katja Rateitschak, Hannes Luz, Martin Vingron:
CORG: a database for COmparative Regulatory Genomics. Nucleic Acids Res. 31(1): 55-57 (2003) - [c2]Christoph Dieterich, Ralf Herwig, Martin Vingron:
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. ECCB 2003: 50-56 - 2002
- [c1]Christoph Dieterich, Brian Cusack, Haiyan Wang, Katja Rateitschak, Antje Krause, Martin Vingron:
Annotating regulatory DNA based on man-mouse genomic comparison. ECCB 2002: 84-90
Coauthor Index
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