Abstract
Free full text
Characterization of hybrid plasmids carrying individual ribosomal ribonucleic acid transcription units of Escherichia coli.
Abstract
We have screened the strains with ColE1 hybrid plasmids constructed by Clarke and Carbon (Cell 9:91-99, 1976) for the presence of ribosomal ribonucleic acid (rRNA) genes on the plasmids and identified 16 strains whose plasmids carry rRNA genes. The structures of these 16 plasmids were compared by heteroduplex analysis, and the plasmids were classified into six groups on the basis of their chromosomal origins. Homology with known transducing-phage deoxyribonucleic acids and genetic mapping have assigned locations on the Escherichia coli chromosome to three of the six groups. These are rrnB near rif at 88 min, rrnC near ilvE at 83 min, and rrnD near aroE at 71 min. A fourth group is probably rrnA at 85 min (T. Ikemura and M. Nomura, Cell, 11:779-793, 1977). We conclude that the minimum number of rRNA transcription units per haploid chromosomes is seven, that is, the six groups identified in this work plus a known operon (rrnE near metA at 89 min) that we failed to find among the hybrid plasmids. This heteroduplex analysis also suggests that there are only two kinds of rRNA operons with respect to their spacer region; three of the six rRNA operon groups studied here have one kind, whereas the remaining three have the other kind.
Full text
Full text is available as a scanned copy of the original print version. Get a printable copy (PDF file) of the complete article (3.3M), or click on a page image below to browse page by page. Links to PubMed are also available for Selected References.
Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bachmann BJ, Low KB, Taylor AL. Recalibrated linkage map of Escherichia coli K-12. Bacteriol Rev. 1976 Mar;40(1):116–167. [Europe PMC free article] [Abstract] [Google Scholar]
- Blair DG, Sherratt DJ, Clewell DB, Helinski DR. Isolation of supercoiled colicinogenic factor E 1 DNA sensitive to ribonuclease and alkali. Proc Natl Acad Sci U S A. 1972 Sep;69(9):2518–2522. [Europe PMC free article] [Abstract] [Google Scholar]
- Brownlee GG, Sanger F, Barrell BG. The sequence of 5 s ribosomal ribonucleic acid. J Mol Biol. 1968 Jun 28;34(3):379–412. [Abstract] [Google Scholar]
- Clarke L, Carbon J. Biochemical construction and selection of hybrid plasmids containing specific segments of the Escherichia coli genome. Proc Natl Acad Sci U S A. 1975 Nov;72(11):4361–4365. [Europe PMC free article] [Abstract] [Google Scholar]
- Clarke L, Carbon J. A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome. Cell. 1976 Sep;9(1):91–99. [Abstract] [Google Scholar]
- Clewell DB. Nature of Col E 1 plasmid replication in Escherichia coli in the presence of the chloramphenicol. J Bacteriol. 1972 May;110(2):667–676. [Europe PMC free article] [Abstract] [Google Scholar]
- Clewell DB, Helinski DR. Effect of growth conditions on the formation of the relaxation complex of supercoiled ColE1 deoxyribonucleic acid and protein in Escherichia coli. J Bacteriol. 1972 Jun;110(3):1135–1146. [Europe PMC free article] [Abstract] [Google Scholar]
- Davies J, Nomura M. The genetics of bacterial ribosomes. Annu Rev Genet. 1972;6:203–234. [Abstract] [Google Scholar]
- Dennis PP, Nomura M. Regulation of the expression of ribosomal protein genes in Escherichia coli. J Mol Biol. 1975 Sep 5;97(1):61–76. [Abstract] [Google Scholar]
- Deonier RC, Otsubo E, Lee HJ, Davidson N. Electron microscope heteroduplex studies of sequence relations among plasmids of Escherichia coli. VII. Mapping the ribosomal RNA genes of plasmid F14. J Mol Biol. 1974 Nov 15;89(4):619–629. [Abstract] [Google Scholar]
- Dunn JJ, Studier FW. T7 early RNAs and Escherichia coli ribosomal RNAs are cut from large precursor RNAs in vivo by ribonuclease 3. Proc Natl Acad Sci U S A. 1973 Dec;70(12):3296–3300. [Europe PMC free article] [Abstract] [Google Scholar]
- Fiandt M, Szybalski W. Physical mapping of the trp endpoint in the n-tL segment of phage lambda trpE-A. Virology. 1974 Sep;61(1):312–314. [Abstract] [Google Scholar]
- Hershfield V, Boyer HW, Yanofsky C, Lovett MA, Helinski DR. Plasmid ColEl as a molecular vehicle for cloning and amplification of DNA. Proc Natl Acad Sci U S A. 1974 Sep;71(9):3455–3459. [Europe PMC free article] [Abstract] [Google Scholar]
- Ikemura T, Nomura M. Expression of spacer tRNA genes in ribosomal RNA transcription units carried by hybrid Col E1 plasmids in E. coli. Cell. 1977 Aug;11(4):779–793. [Abstract] [Google Scholar]
- Jarry B, Rosset R. Heterogeneity of 5S RNA in Escherichia coli. Mol Gen Genet. 1971;113(1):43–50. [Abstract] [Google Scholar]
- Jarry B, Rosset R. Localization of some 5s RNA cistrons on Escherichia coli chromosome. Mol Gen Genet. 1973 Mar 1;121(2):151–162. [Abstract] [Google Scholar]
- Jarry B, Rosset R. Further mapping of 5S RNA cistrons in Escherichia coli. Mol Gen Genet. 1973 Oct 16;126(1):29–35. [Abstract] [Google Scholar]
- Jaskunas SR, Lindahl L, Nomura M. Identification of two copies of the gene for the elongation factor EF-Tu in E. coli. Nature. 1975 Oct 9;257(5526):458–462. [Abstract] [Google Scholar]
- Jorgensen P. A ribosomal RNA gene of Escherichia coli (rrnD) on lamnda daro E specialized transducing phages. Mol Gen Genet. 1976 Aug 2;146(3):303–307. [Abstract] [Google Scholar]
- Kaltschmidt E, Kahan L, Nomura M. In vitro synthesis of ribosomal proteins directed by Escherichia coli DNA. Proc Natl Acad Sci U S A. 1974 Feb;71(2):446–450. [Europe PMC free article] [Abstract] [Google Scholar]
- Kirschbaum JB, Konrad EB. Isolation of a specialized lambda transducing bacteriophage carrying the beta subunit gene for Escherichia coli ribonucleic acid polymerase. J Bacteriol. 1973 Nov;116(2):517–526. [Europe PMC free article] [Abstract] [Google Scholar]
- Konrad B, Kirschbaum J, Austin S. Isolation and characterization of phi80 transducing bacteriophage for a ribonucleic acid polymerase gene. J Bacteriol. 1973 Nov;116(2):511–516. [Europe PMC free article] [Abstract] [Google Scholar]
- Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. [Abstract] [Google Scholar]
- Lindahl L, Jaskunas SR, Dennis PP, Nomura M. Cluster of genes in Escherichia coli for ribosomal proteins, ribosomal RNA, and RNA polymerase subunits. Proc Natl Acad Sci U S A. 1975 Jul;72(7):2743–2747. [Europe PMC free article] [Abstract] [Google Scholar]
- Lindahl L, Post L, Nomura M. DNA-dependent in vitro synthesis of fibosomal proteins, protein elongation factors, and RNA polymerase subunit alpha: inhibition by ppGpp. Cell. 1976 Nov;9(3):439–448. [Abstract] [Google Scholar]
- Lindahl S, Yamamoto M, Nomura M. Mapping of a cluster of genes for components of the transcriptional and translational machineries of Escherichia coli. J Mol Biol. 1977 Jan 5;109(1):23–47. [Abstract] [Google Scholar]
- Lindahl L, Zengel J, Nomura M. Organization of ribosomal protein genes in Escherichia coli. II. Mapping of ribosomal protein genes by in vitro synthesis of ribosomal proteins using DNA fragments of a transducing phage as templates. J Mol Biol. 1976 Sep 25;106(3):837–855. [Abstract] [Google Scholar]
- Lobban PE, Kaiser AD. Enzymatic end-to end joining of DNA molecules. J Mol Biol. 1973 Aug 15;78(3):453–471. [Abstract] [Google Scholar]
- Lund E, Dahlberg JE, Lindahl L, Jaskunas SR, Dennis PP, Nomura M. Transfer RNA genes between 16S and 23S rRNA genes in rRNA transcription units of E. coli. Cell. 1976 Feb;7(2):165–177. [Abstract] [Google Scholar]
- Morgan EA, Ikemura T, Nomura M. Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli. Proc Natl Acad Sci U S A. 1977 Jul;74(7):2710–2714. [Europe PMC free article] [Abstract] [Google Scholar]
- Morgan EA, Kaplan S. Transcription of Escherichia coli ribosomal DNA in Proteus mirabilis. Mol Gen Genet. 1976 Aug 19;147(2):179–188. [Abstract] [Google Scholar]
- Morgan EA, Kaplan S. Expression and stability of Escherichia coli F-prime factors in Proteus mirabilis. Mol Gen Genet. 1977 Feb 28;151(1):41–47. [Abstract] [Google Scholar]
- Nikolaev N, Silengo L, Schlessinger D. A role for ribonuclease 3 in processing of ribosomal ribonucleic acid and messenger ribonucleic acid precursors in Escherichia coli. J Biol Chem. 1973 Nov 25;248(22):7967–7969. [Abstract] [Google Scholar]
- Otsubo E, Soll L, Deonier RC, Lee HJ, Davidson N. Electron microscope heteroduplex studies of sequence relations among plasmids of Escherichia coli. VIII. The structure of bacteriophage phi 80d-3ilv+su+7, including the mapping of the ribosomal RNA genes. J Mol Biol. 1974 Nov 15;89(4):631–646. [Abstract] [Google Scholar]
- Pace NR. Structure and synthesis of the ribosomal ribonucleic acid of prokaryotes. Bacteriol Rev. 1973 Dec;37(4):562–603. [Europe PMC free article] [Abstract] [Google Scholar]
- Reiner AM. Genetic locus for ribonuclease I in Escherichia coli. J Bacteriol. 1969 Mar;97(3):1522–1523. [Europe PMC free article] [Abstract] [Google Scholar]
- Schwartz SA, Helinski DR. Purification and characterization of colicin E1. J Biol Chem. 1971 Oct 25;246(20):6318–6327. [Abstract] [Google Scholar]
- Sharp PA, Hsu MT, Otsubo E, Davidson N. Electron microscope heteroduplex studies of sequence relations among plasmids of Escherichia coli. I. Structure of F-prime factors. J Mol Biol. 1972 Nov 14;71(2):471–497. [Abstract] [Google Scholar]
- Shinnick TM, Lund E, Smithies O, Blattner FR. Hybridization of labeled RNA to DNA in agarose gels. Nucleic Acids Res. 1975 Oct;2(10):1911–1929. [Europe PMC free article] [Abstract] [Google Scholar]
- Sidikaro J, Masayasu N. In vitro synthesis of the E3 immunity protein directed by Col E3 plasmid deoxyribonucleic acid. J Biol Chem. 1975 Feb 10;250(3):1123–1131. [Abstract] [Google Scholar]
- Starlinger P, Saedler H. IS-elements in microorganisms. Curr Top Microbiol Immunol. 1976;75:111–152. [Abstract] [Google Scholar]
- Watson RJ, Parker J, Fiil NP, Flaks JG, Friesen JD. New chromosomal location for structural genes of ribosomal proteins. Proc Natl Acad Sci U S A. 1975 Jul;72(7):2765–2769. [Europe PMC free article] [Abstract] [Google Scholar]
- Yamamoto M, Lindahl L, Nomura M. Synthesis of ribosomal RNA in E. coli: analysis using deletion mutants of a lambda transducing phage carrying ribosomal RNA genes. Cell. 1976 Feb;7(2):179–190. [Abstract] [Google Scholar]
- Yamamoto M, Nomura M. Isolation of lambda transducing phages carrying rRNA genes at the metA-purD region of the Escherichia coli chromosome. FEBS Lett. 1976 Dec 31;72(2):256–261. [Abstract] [Google Scholar]
Associated Data
Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)
Full text links
Read article at publisher's site: https://doi.org/10.1128/jb.132.3.931-949.1977
Read article for free, from open access legal sources, via Unpaywall: https://jb.asm.org/content/jb/132/3/931.full.pdf
Free to read at jb.asm.org
http://jb.asm.org/cgi/content/abstract/132/3/931
Free after 4 months at jb.asm.org
http://jb.asm.org/cgi/reprint/132/3/931
Citations & impact
Impact metrics
Citations of article over time
Article citations
Switching from prokaryotic molecular biology to eukaryotic molecular biology.
J Biol Chem, 284(15):9625-9635, 12 Dec 2008
Cited by: 2 articles | PMID: 19074426 | PMCID: PMC2665082
Characterization of the three ribosomal RNA operons rrnA, rrnB, and rrnC, from Brucella melitensis.
Gene, 255(1):117-126, 01 Sep 2000
Cited by: 11 articles | PMID: 10974571
Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism.
Appl Environ Microbiol, 62(9):3112-3120, 01 Sep 1996
Cited by: 179 articles | PMID: 8795197 | PMCID: PMC168103
Use of polymerase chain reaction (PCR) fingerprinting to differentiate bacteria for microbial products screening.
J Ind Microbiol, 15(2):85-93, 01 Aug 1995
Cited by: 9 articles | PMID: 7576465
Polymerase chain reaction identification of Salmonella serotypes.
Lett Appl Microbiol, 19(4):273-276, 01 Oct 1994
Cited by: 13 articles | PMID: 7765402
Go to all (71) article citations
Similar Articles
To arrive at the top five similar articles we use a word-weighted algorithm to compare words from the Title and Abstract of each citation.
Organization of bacterial genes for ribosomal components: studies using novel approaches.
Cell, 9(4 pt 2):633-644, 01 Dec 1976
Cited by: 29 articles | PMID: 797458
Some rRNA operons in E. coli have tRNA genes at their distal ends.
Cell, 13(2):335-344, 01 Feb 1978
Cited by: 51 articles | PMID: 342117
Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli.
Proc Natl Acad Sci U S A, 74(7):2710-2714, 01 Jul 1977
Cited by: 51 articles | PMID: 331313 | PMCID: PMC431257
Genetics of bacterial ribosomes.
Annu Rev Genet, 11:297-347, 01 Jan 1977
Cited by: 193 articles | PMID: 339818
Review