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Search life-sciences literature (45,100,050 articles, preprints and more)

Suggested authors matching "AUTH:Casiraghi E" with an ORCID

Elena Casiraghi
Universita' degli Studi di MILANO
13
Publications
543
Citations
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Chemical reaction enhanced graph learning for molecule representation.
Li A, Casiraghi E, Rousu J
Bioinformatics, 40(10):btae558, 01 Oct 2024
Cited by: 0 articles | PMID: 39271156
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Cancer-associated foam cells hamper protective T cell immunity and favor tumor progression in human colon carcinogenesis.
Daveri E, Vergani B, Lalli L, Ferrero G, Casiraghi E, Cova A, Zorza M, Huber V, Gariboldi M, Pasanisi P, Guarrera S, Morelli D, Arienti F, Vitellaro M, Corsetto PA, Rizzo AM, Stroscia M, Frati P, Lagano V, [...] Rivoltini L
J Immunother Cancer, 12(10):e009720, 12 Oct 2024
Cited by: 0 articles | PMID: 39395839 | PMCID: PMC11474856
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Effects of Maltodextrin-Fructose Supplementation on Inflammatory Biomarkers and Lipidomic Profile Following Endurance Running: A Randomized Placebo-Controlled Cross-Over Trial.
Righetti S, Medoro A, Graziano F, Mondazzi L, Martegani S, Chiappero F, Casiraghi E, Petroni P, Corbi G, Pina R, Scapagnini G, Davinelli S, Ricordi C
Nutrients, 16(18):3078, 12 Sep 2024
Cited by: 0 articles | PMID: 39339678 | PMCID: PMC11434986
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An ontology-based knowledge graph for representing interactions involving RNA molecules.
Cavalleri E, Cabri A, Soto-Gomez M, Bonfitto S, Perlasca P, Gliozzo J, Callahan TJ, Reese J, Robinson PN, Casiraghi E, Valentini G, Mesiti M
Sci Data, 11(1):906, 22 Aug 2024
Cited by: 0 articles | PMID: 39174566 | PMCID: PMC11341713
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Fine-tuning of conditional Transformers for the generation of functionally characterized enzymes
Nicolini M, Saitto E, Jimenez Franco RE, Cavalleri E, Mesiti M, Galeano Alfonso AJ, Malchiodi D, Paccanaro A, Robinson PN, Casiraghi E, Valentini G
bioRxiv, 10 Aug 2024
Cited by: 0 articles | PPR: PPR893409
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Leveraging Generative AI to Accelerate Biocuration of Medical Actions for Rare Disease
Niyonkuru E, Caufield JH, carmody L, Gargano M, Toro S, Whetzel T, Blau H, Soto M, Casiraghi E, Chimirri L, Reese JT, Valentini G, Haendel MA, Mungall CJ, Robinson PN
medRxiv, 22 Aug 2024
Cited by: 0 articles | PPR: PPR899726
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Fine-tuning of conditional Transformers for the generation of functionally characterized enzymes
Valentini G, Nicolini M, Saitto E, Franco RJ, Cavalleri E, Mesiti M, Galeano A, Malchiodi D, Paccanaro A, Robinson P, Casiraghi E
Research Square, 10 Sep 2024
Cited by: 0 articles | PPR: PPR908922
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Association of post-COVID phenotypic manifestations with new-onset psychiatric disease.
Coleman B, Casiraghi E, Callahan TJ, Blau H, Chan LE, Laraway B, Clark KB, Re'em Y, Gersing KR, Wilkins KJ, Harris NL, Valentini G, Haendel MA, Reese JT, Robinson PN
Transl Psychiatry, 14(1):246, 08 Jun 2024
Cited by: 0 articles | PMID: 38851761
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Systematic benchmarking demonstrates large language models have not reached the diagnostic accuracy of traditional rare-disease decision support tools
Reese JT, Chimirri L, Bridges Y, Danis D, Caufield JH, Wissink K, McMurry JA, Graefe AS, Casiraghi E, Valentini G, Jacobsen JO, Haendel M, Smedley D, Mungall CJ, Robinson PN
medRxiv, 22 Jul 2024
Cited by: 0 articles | PPR: PPR884605
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Spatial distribution of tumour immune infiltrate predicts outcomes of patients with high-risk soft tissue sarcomas after neoadjuvant chemotherapy.
Pasquali S, Vallacchi V, Lalli L, Collini P, Barisella M, Romagosa C, Bague S, Coindre JM, Dei Tos AP, Palmerini E, Quagliuolo V, Martin-Broto J, Lopez-Pousa A, Grignani G, Blay JY, Beveridge RD, Casiraghi E, Brich S, Renne SL, [...] Gronchi A
EBioMedicine, 106:105220, 16 Jul 2024
Cited by: 0 articles | PMID: 39018755 | PMCID: PMC11287012
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Replacing non-biomedical concepts improves embedding of biomedical concepts
Niyonkuru E, Soto Gomez M, Casiraghi E, Antogiovanni S, Blau H, Reese JT, Valentini G, Robinson PN
bioRxiv, 04 Jul 2024
Cited by: 0 articles | PPR: PPR877156
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Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests.
Chan LE, Casiraghi E, Reese J, Harmon QE, Schaper K, Hegde H, Valentini G, Schmitt C, Motsinger-Reif A, Hall JE, Mungall CJ, Robinson PN, Haendel MA
Int J Med Inform, 187:105461, 17 Apr 2024
Cited by: 1 article | PMID: 38643701
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An open source knowledge graph ecosystem for the life sciences.
Callahan TJ, Tripodi IJ, Stefanski AL, Cappelletti L, Taneja SB, Wyrwa JM, Casiraghi E, Matentzoglu NA, Reese J, Silverstein JC, Hoyt CT, Boyce RD, Malec SA, Unni DR, Joachimiak MP, Robinson PN, Mungall CJ, Cavalleri E, Fontana T, [...] Hunter LE
Sci Data, 11(1):363, 11 Apr 2024
Cited by: 4 articles | PMID: 38605048 | PMCID: PMC11009265
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Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning.
Cappelletti L, Rekerle L, Fontana T, Hansen P, Casiraghi E, Ravanmehr V, Mungall CJ, Yang JJ, Spranger L, Karlebach G, Caufield JH, Carmody L, Coleman B, Oprea TI, Reese J, Valentini G, Robinson PN
Bioinform Adv, 4(1):vbae036, 04 Mar 2024
Cited by: 1 article | PMID: 38577542 | PMCID: PMC10994718
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The Use of Artificial Intelligence in Head and Neck Cancers: A Multidisciplinary Survey.
Giannitto C, Carnicelli G, Lusi S, Ammirabile A, Casiraghi E, De Virgilio A, Esposito AA, Farina D, Ferreli F, Franzese C, Frigerio GM, Lo Casto A, Malvezzi L, Lorini L, Othman AE, Preda L, Scorsetti M, Bossi P, Mercante G, [...] Francone M
J Pers Med, 14(4):341, 25 Mar 2024
Cited by: 1 article | PMID: 38672968 | PMCID: PMC11050769
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Intrinsic-Dimension analysis for guiding dimensionality reduction and data-fusion in multi-omics data processing
Gliozzo J, Guarino V, Bonometti A, Cabri A, Cavalleri E, Soto-Gomez M, Reese J, Robinson PN, Mesiti M, Valentini G, Casiraghi E
bioRxiv, 25 Jan 2024
Cited by: 0 articles | PPR: PPR793240
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The promises of large language models for protein design and modeling.
Valentini G, Malchiodi D, Gliozzo J, Mesiti M, Soto-Gomez M, Cabri A, Reese J, Casiraghi E, Robinson PN
Front Bioinform, 3:1304099, 23 Nov 2023
Cited by: 2 articles | PMID: 38076030 | PMCID: PMC10701588
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Clinical Impact of a Protocol Involving Cone-Beam CT (CBCT), Fusion Imaging and Ablation Volume Prediction in Percutaneous Image-Guided Microwave Ablation in Patients with Hepatocellular Carcinoma Unsuitable for Standard Ultrasound (US) Guidance.
Biondetti P, Ierardi AM, Casiraghi E, Caruso A, Grillo P, Carriero S, Lanza C, Angileri SA, Sangiovanni A, Iavarone M, Guzzardi G, Carrafiello G
J Clin Med, 12(24):7598, 09 Dec 2023
Cited by: 1 article | PMID: 38137667 | PMCID: PMC10743619
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Predictive models of long COVID.
Antony B, Blau H, Casiraghi E, Loomba JJ, Callahan TJ, Laraway BJ, Wilkins KJ, Antonescu CC, Valentini G, Williams AE, Robinson PN, Reese JT, Murali TM, N3C consortium
EBioMedicine, 96:104777, 04 Sep 2023
Cited by: 8 articles | PMID: 37672869 | PMCID: PMC10494314
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On the limitations of large language models in clinical diagnosis
Reese JT, Danis D, Caufield JH, Groza T, Casiraghi E, Valentini G, Mungall CJ, Robinson PN
medRxiv, 14 Jul 2023
Cited by: 0 articles | PPR: PPR691524
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GRAPE for fast and scalable graph processing and random-walk-based embedding.
Cappelletti L, Fontana T, Casiraghi E, Ravanmehr V, Callahan TJ, Cano C, Joachimiak MP, Mungall CJ, Robinson PN, Reese J, Valentini G
Nat Comput Sci, 3(6):552-568, 26 Jun 2023
Cited by: 9 articles | PMID: 38177435 | PMCID: PMC10768636
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Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests
Chan LE, Casiraghi E, Putman T, Reese J, Harmon QE, Schaper K, Hedge H, Valentini G, Schmitt C, Motsinger-Reif A, Hall JE, Mungall CJ, Robinson PN, Haendel MA
medRxiv, 16 Jul 2023
Cited by: 0 articles | PPR: PPR692070
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Ontologizing health systems data at scale: making translational discovery a reality.
Callahan TJ, Stefanski AL, Wyrwa JM, Zeng C, Ostropolets A, Banda JM, Baumgartner WA, Boyce RD, Casiraghi E, Coleman BD, Collins JH, Deakyne Davies SJ, Feinstein JA, Lin AY, Martin B, Matentzoglu NA, Meeker D, Reese J, Sinclair J, [...] Kahn MG
NPJ Digit Med, 6(1):89, 19 May 2023
Cited by: 7 articles | PMID: 37208468 | PMCID: PMC10196319
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Image-Guided Intraoperative Assessment of Surgical Margins in Oral Cavity Squamous Cell Cancer: A Diagnostic Test Accuracy Review.
Carnicelli G, Disconzi L, Cerasuolo M, Casiraghi E, Costa G, De Virgilio A, Esposito AA, Ferreli F, Fici F, Lo Casto A, Marra S, Malvezzi L, Mercante G, Spriano G, Torzilli G, Francone M, Balzarini L, Giannitto C
Diagnostics (Basel), 13(11):1846, 25 May 2023
Cited by: 3 articles | PMID: 37296701 | PMCID: PMC10252470
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An expectation-maximization framework for comprehensive prediction of isoform-specific functions.
Karlebach G, Carmody L, Sundaramurthi JC, Casiraghi E, Hansen P, Reese J, Mungall CJ, Valentini G, Robinson PN
Bioinformatics, 39(4):btad132, 01 Apr 2023
Cited by: 2 articles | PMID: 36929917 | PMCID: PMC10079350
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