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Search life-sciences literature (45,100,050 articles, preprints and more)

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Lipid profiles in ST-elevation myocardial infarction with and without diabetes: the gap between prescription and targets
Biasin M, Cordioli N, Armani I, Guerrieri L, Parmegian G, Sarai A, Ribichini FL, Gamabaro A
medRxiv, 18 Apr 2024
Cited by: 0 articles | PPR: PPR838935
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Analysis of the relationships between evolvability, thermodynamics, and the functions of intrinsically disordered proteins/regions.
Huang H, Sarai A
Comput Biol Chem, 41:51-57, 23 Oct 2012
Cited by: 12 articles | PMID: 23153654
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NF-E2 p45 is important for establishing normal function of platelets.
Fujita R, Takayama-Tsujimoto M, Satoh H, Gutiérrez L, Aburatani H, Fujii S, Sarai A, Bresnick EH, Yamamoto M, Motohashi H
Mol Cell Biol, 33(14):2659-2670, 06 May 2013
Cited by: 22 articles | PMID: 23648484 | PMCID: PMC3700136
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Prediction of dinucleotide-specific RNA-binding sites in proteins.
Fernandez M, Kumagai Y, Standley DM, Sarai A, Mizuguchi K, Ahmad S, Ahmad S
BMC Bioinformatics, 12 Suppl 13:S5, 30 Nov 2011
Cited by: 20 articles | PMID: 22373260 | PMCID: PMC3278845
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A new method for evaluating the specificity of indirect readout in protein-DNA recognition.
Yamasaki S, Terada T, Kono H, Shimizu K, Sarai A
Nucleic Acids Res, 40(17):e129, 22 May 2012
Cited by: 10 articles | PMID: 22618872 | PMCID: PMC3458528
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Identification of genes upregulated in ALK-positive and EGFR/KRAS/ALK-negative lung adenocarcinomas.
Okayama H, Kohno T, Ishii Y, Shimada Y, Shiraishi K, Iwakawa R, Furuta K, Tsuta K, Shibata T, Yamamoto S, Watanabe S, Sakamoto H, Kumamoto K, Takenoshita S, Gotoh N, Mizuno H, Sarai A, Kawano S, Yamaguchi R, [...] Yokota J
Cancer Res, 72(1):100-111, 11 Nov 2011
Cited by: 592 articles | PMID: 22080568
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Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction.
Ahmad S, Ahmad S, Sarai A
BMC Struct Biol, 11:8, 01 Feb 2011
Cited by: 20 articles | PMID: 21284850 | PMCID: PMC3048485
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CCRXP: exploring clusters of conserved residues in protein structures.
Ahmad S, Ahmad S, Keskin O, Mizuguchi K, Sarai A, Nussinov R
Nucleic Acids Res, 38(web server issue):W398-401, 10 May 2010
Cited by: 7 articles | PMID: 20457748 | PMCID: PMC2896124
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Genetic algorithm optimization in drug design QSAR: Bayesian-regularized genetic neural networks (BRGNN) and genetic algorithm-optimized support vectors machines (GA-SVM).
Fernandez M, Caballero J, Fernandez L, Sarai A
Mol Divers, 15(1):269-289, 20 Mar 2010
Cited by: 22 articles | PMID: 20306130
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Proteochemometric recognition of stable kinase inhibition complexes using topological autocorrelation and support vector machines.
Fernandez M, Ahmad S, Ahmad S, Sarai A
J Chem Inf Model, 50(6):1179-1188, 01 Jun 2010
Cited by: 7 articles | PMID: 20524632
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A generalized conformational energy function of DNA derived from molecular dynamics simulations.
Yamasaki S, Terada T, Shimizu K, Kono H, Sarai A
Nucleic Acids Res, 37(20):e135, 03 Sep 2009
Cited by: 3 articles | PMID: 19729512 | PMCID: PMC2777435
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Thermodynamic database for proteins: features and applications.
Gromiha MM, Sarai A
Methods Mol Biol, 609:97-112, 01 Jan 2010
Cited by: 12 articles | PMID: 20221915
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Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks.
Andrabi M, Mizuguchi K, Sarai A, Ahmad S, Ahmad S
BMC Struct Biol, 9:30, 13 May 2009
Cited by: 22 articles | PMID: 19439068 | PMCID: PMC2693520
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MHC class II DR classification based on antigen-binding groove natural selection.
Takeshima SN, Sarai A, Saitou N, Aida Y
Biochem Biophys Res Commun, 385(2):137-142, 05 May 2009
Cited by: 15 articles | PMID: 19422791
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PrognoScan: a new database for meta-analysis of the prognostic value of genes.
Mizuno H, Kitada K, Nakai K, Sarai A
BMC Med Genomics, 2:18, 24 Apr 2009
Cited by: 625 articles | PMID: 19393097 | PMCID: PMC2689870
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Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast.
Fernandez M, Fujii S, Kono H, Sarai A
Genome Inform, 23(1):13-20, 01 Oct 2009
Cited by: 1 article | PMID: 20180258
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A signature-based method for indexing cell cycle phase distribution from microarray profiles.
Mizuno H, Nakanishi Y, Ishii N, Sarai A, Kitada K
BMC Genomics, 10:137, 30 Mar 2009
Cited by: 21 articles | PMID: 19331659 | PMCID: PMC2676301
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Protein-DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins.
Ahmad S, Ahmad S, Keskin O, Sarai A, Nussinov R
Nucleic Acids Res, 36(18):5922-5932, 18 Sep 2008
Cited by: 42 articles | PMID: 18801847 | PMCID: PMC2566867
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DeltaG-based prediction and experimental confirmation of SYCRP1-binding sites on the Synechocystis genome.
Omagari K, Yoshimura H, Suzuki T, Takano M, Ohmori M, Sarai A
FEBS J, 275(19):4786-4795, 29 Aug 2008
Cited by: 10 articles | PMID: 18761670
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Indirect readout in drug-DNA recognition: role of sequence-dependent DNA conformation.
Araúzo-Bravo MJ, Sarai A
Nucleic Acids Res, 36(2):376-386, 26 Nov 2007
Cited by: 10 articles | PMID: 18039704 | PMCID: PMC2241865
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uORFs, reinitiation and alternative translation start sites in human mRNAs.
Kochetov AV, Ahmad S, Ahmad S, Ivanisenko V, Volkova OA, Kolchanov NA, Sarai A
FEBS Lett, 582(9):1293-1297, 20 Mar 2008
Cited by: 47 articles | PMID: 18358843
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AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site.
Kochetov AV, Palyanov A, Titov II, Grigorovich D, Sarai A, Kolchanov NA
BMC Bioinformatics, 8:318, 30 Aug 2007
Cited by: 36 articles | PMID: 17760957 | PMCID: PMC2001202
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Sequence-dependent DNA deformability studied using molecular dynamics simulations.
Fujii S, Kono H, Takenaka S, Go N, Sarai A
Nucleic Acids Res, 35(18):6063-6074, 30 Aug 2007
Cited by: 79 articles | PMID: 17766249 | PMCID: PMC2094071
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Antigenic properties of porcine teschovirus 1 (PTV-1) Talfan strain and molecular strategy for serotyping of PTVs.
Kaku Y, Murakami Y, Sarai A, Wang Y, Ohashi S, Sakamoto K
Arch Virol, 152(5):929-940, 31 Jan 2007
Cited by: 20 articles | PMID: 17265104
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Classification of protein-DNA complexes based on structural descriptors.
Prabakaran P, Siebers JG, Ahmad S, Gromiha MM, Singarayan MG, Sarai A
Structure, 14(9):1355-1367, 01 Sep 2006
Cited by: 27 articles | PMID: 16962967
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