satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Repository for Programming Assignment 2 for R Programming on Coursera
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Community-provided extensions to Seurat
GPT RStudio addins that enable GPT assisted coding, writing & analysis
R Interface to Python
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
Inferring CNV from Single-Cell RNA-Seq
Interfaces for HDF5-based Single Cell File Formats
Make Complex Heatmaps
Simple Features for R
R package for detecting doublets in single-cell RNA sequencing data
renv: Project environments for R.
R package for performing 2-sample MR using MR-Base database
Combination matrix axis for 'ggplot2' to create 'UpSet' plots
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
🎓 A collection of interactive courses for the swirl R package.
Fast, sensitive and accurate integration of single-cell data with Harmony