Panicum virgatum (switchgrass): 120642039
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Entry
120642039 CDS
T07260
Name
(RefSeq) farnesyl pyrophosphate synthase-like isoform X1
KO
K00787
farnesyl diphosphate synthase [EC:
2.5.1.1
2.5.1.10
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120642039
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120642039
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120642039
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
120642039
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120642039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
120642039
NCBI-ProteinID:
XP_039774347
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All DBs
Position
7K:complement(50294456..50299942)
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AA seq
436 aa
AA seq
DB search
MGALAASVASRVPSGLSLAALASPGEIIRRASRLEEELKELLRVHGGGLAGAEQHGGGRQ
QTKERFLRAYERLKTELLNDRAFNFDFSEETRQWVAKMLDYNVPGGKLNRGLSVIDSYML
LREGTEVDDEDFYLACVLGWCVEWLQASALVLDDITDNAYTRRDNLCWYKLPTVGLSAIN
DGVLLKCHVQAIIKRYFKDKFYFLDLLELWSEIGLQTAMGQMLDLITTHTGAKDLARYRI
QGYRRIVKYKTSYYSFYLPFKKGLIPFKQVACALLLNDAKLSDYIELKNVLIEMGVYFQI
QDDYLDCFGDPEVIGKVQKNDPSLVLTIVMLMASVRPIDLVGTDIEDYKCSWLIVQAMEL
ANENEMKILYENYGKSDPQCVAAVKNVYKELDLQDIFLEYESRVYKHQVSTIDAEADRAI
REILKIFLKKIYRRKK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgggggccctggcggcgtcggtcgcgtcgcgcgtgccgtcggggctgtcgctggcggcg
ctggcgagccccggcgagatcatccggcgggcgtcgcggctcgaggaggagctcaaggag
ctgctccgggtgcacggcggcggcctggcgggggcggagcagcatggcggaggccggcag
cagaccaaggagcggttcctgcgcgcgtacgagcgcctcaagacggagctgctcaacgac
cgcgccttcaacttcgacttctccgaggagaccaggcagtgggtcgccaagatgctggac
tacaacgtacctggaggtaaactgaaccgcgggctctcggtgatcgatagctacatgctg
ctgagggaagggaccgaggtcgacgacgaggacttctacctcgcctgtgtgctcggttgg
tgcgtcgagtggctacaagcgtctgcgcttgtgctcgacgacatcacggacaacgcctac
acgaggcgggacaatctctgctggtacaagctgccaacggttggcctgtccgctataaac
gacggtgttctgctgaaatgccatgtccaggccatcatcaagagatacttcaaggacaag
ttctatttcctggaccttttggaactctggagcgagattggtctgcagacagccatgggg
cagatgctcgatctcatcacaactcacactggtgccaaggatcttgcgagatacagaatt
caagggtaccgtcgcatagtgaagtataagacatcctactattctttctatctgccgttc
aaaaaaggtttgattccgttcaagcaggttgcatgtgcattgctcctgaatgatgcgaaa
ctgagcgattacattgagttgaaaaacgtactcatcgaaatgggcgtatactttcagata
caggatgactacctggactgctttggtgaccctgaagtgattggcaaggtacaaaagaac
gatccatcccttgtccttacaattgttatgttgatggcttcagtccgacctatcgatctg
gttggaacagacatagaagactacaagtgttcgtggctaatagtccaggctatggaactg
gctaatgagaatgagatgaaaatattatatgagaactatggcaagtctgatccacaatgt
gttgcggcagtgaagaatgtttacaaagagcttgatcttcaggacatatttttggagtac
gagtcaagagtatacaagcaccaggtttcgaccattgacgccgaggcagaccgtgcaatt
cgggagattctgaagatcttcttgaagaagatttacaggaggaagaagtag
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