 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 28, 2012 |
| Title |
HudsonAlpha_ChipSeq_GM12878_CEBPB_(SC-150)_v042211.1 |
| Sample type |
SRA |
| |
|
| Source name |
GM12878
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of CEBPB of rat origin. Antibody Target: CEBPB
antibody targetdescription: The protein encoded by this intronless gene is a bZIP transcription factor which can bind as a homodimer to certain DNA regulatory regions. It can also form heterodimers with the related proteins CEBP-alpha, CEBP-delta, and CEBP-gamma. The encoded protein is important in the regulation of genes involved in immune and inflammatory responses and has been shown to bind to the IL-1 response element in the IL-6 gene, as well as to regulatory regions of several acute-phase and cytokine genes. In addition, the encoded protein can bind the promoter and upstream element and stimulate the expression of the collagen type I gene (provided by RefSeq).
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-150
controlid: SL6022
labexpid: SL9542,SL8084
softwareversion: MACS
cell sex: F
antibody: CEBPB_(SC-150)
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of CEBPB of rat origin. Antibody Target: CEBPB
antibody targetdescription: The protein encoded by this intronless gene is a bZIP transcription factor which can bind as a homodimer to certain DNA regulatory regions. It can also form heterodimers with the related proteins CEBP-alpha, CEBP-delta, and CEBP-gamma. The encoded protein is important in the regulation of genes involved in immune and inflammatory responses and has been shown to bind to the IL-1 response element in the IL-6 gene, as well as to regulatory regions of several acute-phase and cytokine genes. In addition, the encoded protein can bind the promoter and upstream element and stimulate the expression of the collagen type I gene (provided by RefSeq).
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-150
treatment: None
treatment description: No special treatment or protocol applies
protocol: v042211.1
protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
controlid: SL6022
labexpid: SL9542,SL8084
replicate: 1,2
softwareversion: MACS
|
| Biomaterial provider |
Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
|
| Treatment protocol |
None
|
| Growth protocol |
GM12878_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
| |
|
| Submission date |
Sep 28, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
[email protected]
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (2) |
| GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX190306 |
| BioSample |
SAMN01731735 |
| Named Annotation |
GSM1010850_hg19_wgEncodeHaibTfbsGm12878Cebpbsc150V0422111RawRep1.bigWig |
| Named Annotation |
GSM1010850_hg19_wgEncodeHaibTfbsGm12878Cebpbsc150V0422111RawRep2.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1010850_hg19_wgEncodeHaibTfbsGm12878Cebpbsc150V0422111PkRep1.broadPeak.gz |
181.2 Kb |
(ftp)(http) |
BROADPEAK |
| GSM1010850_hg19_wgEncodeHaibTfbsGm12878Cebpbsc150V0422111PkRep2.broadPeak.gz |
55.1 Kb |
(ftp)(http) |
BROADPEAK |
| GSM1010850_hg19_wgEncodeHaibTfbsGm12878Cebpbsc150V0422111RawRep1.bigWig |
289.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM1010850_hg19_wgEncodeHaibTfbsGm12878Cebpbsc150V0422111RawRep2.bigWig |
128.8 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
