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GEO accession:
Sample GSM112568
Query DataSets for GSM112568
Status
Public on Sep 30, 2006
Title
NA12878_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 4
Biomaterial provider
Coriell NA12878
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12878
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
[email protected]
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AA
0.062500
6.905
0.796271
0.989978
SNP_A-2222671
AA
0.132813
5.052
0.844615
0.758687
SNP_A-1879718
AB
0.007813
16.419
0.553251
0.475243
SNP_A-2192013
BB
0.007813
13.120
0.038765
0.117881
SNP_A-2161785
AB
0.015625
10.182
0.644978
0.408944
SNP_A-1924692
AB
0.007813
5.132
0.399942
0.263407
SNP_A-2059484
AB
0.023438
6.900
0.560284
0.587925
SNP_A-1921272
AB
0.023438
9.108
0.518678
0.375514
SNP_A-2045948
BB
0.023438
6.041
0.232010
0.129224
SNP_A-2024190
AB
0.359375
0.654
0.460654
0.263959
SNP_A-2166839
AB
0.023438
6.314
0.690539
0.701648
SNP_A-1999651
BB
0.007813
10.329
0.088235
0.086276
SNP_A-2049421
BB
0.039063
15.349
0.188703
0.059454
SNP_A-2220047
AB
0.015625
11.443
0.460938
0.410968
SNP_A-1916560
BB
0.007813
23.438
0.000000
0.001153
SNP_A-2094813
AB
0.007813
8.458
0.505461
0.509828
SNP_A-2190792
AA
0.382813
0.358
0.736674
0.785880
SNP_A-2033074
BB
0.023438
16.773
0.012690
0.102421
SNP_A-2131660
BB
0.382813
6.656
0.438022
0.039528
SNP_A-1780523
AA
0.007813
20.859
1.000000
1.000000
Total number of rows:
267231
Table truncated, full table size
13184 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112568.CEL.gz
44.3 Mb
(ftp)
(http)
CEL
GSM112568_raw.txt.gz
27.0 Mb
(ftp)
(http)
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