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Sample GSM749669

Query DataSets for GSM749669

Status

Public on Jun 29, 2011

Title

Stam_GM12878_Input_1

Sample type

SRA

Source name

GM12878

Organism

Homo sapiens

Characteristics

cell: GM12878
cell organism: Human
cell description: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
antibody: Input
replicate: 1

Biomaterial provider

Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/GM12878_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs

Submission date

Jun 28, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (1)

GSE30263

CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington

Relations

SRA

SRX080332

BioSample

SAMN00631349

Named Annotation

GSM749669_hg19_wgEncodeUwTfbsGm12878InputStdRawRep1.bigWig

Supplementary file	Size	Download	File type/resource
GSM749669_hg19_wgEncodeUwTfbsGm12878InputStdAlnRep1.bam	627.0 Mb	(ftp)(http)	BAM
GSM749669_hg19_wgEncodeUwTfbsGm12878InputStdRawRep1.bigWig	144.9 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file