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Sample GSM935415 Query DataSets for GSM935415
Status Public on May 22, 2012
Title Harvard_ChipSeq_GM12878_GCN5_std
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics lab: Harvard
lab description: Struhl - Harvard University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM12878
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: GCN5
antibody antibodydescription: Rabbit polyclonal anti-GCN5 antibody (2676), Immunogen : synthetic peptide coupled to Ovalbumin (sequence-MAEPSQAPTPAPAAQPRPLC). Antibody Target: GCN5
antibody targetdescription: KAT2A, or GCN5, is a histone acetyltransferase (HAT) that functions primarily as a transcriptional activator. Acetylation of histones gives a specific tag for epigenetic transcription activation. In case of HIV-1 infection, it is recruited by the viral protein Tat. Regulates Tat's transactivating activity and may help inducing chromatin remodeling of proviral genes. Component of the SAGA and ATAC complexes, complexes with histone acetyltransferase activities on histones H3 and H4
antibody vendorname: Laszlo Tora
antibody vendorid: Missing
control: std
control description: Standard input signal for most experiments.
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000625
replicate: 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) [email protected]
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX150494
BioSample SAMN01000954
Named Annotation GSM935415_hg19_wgEncodeSydhTfbsGm12878Gcn5StdSig.bigWig

Supplementary file Size Download File type/resource
GSM935415_hg19_wgEncodeSydhTfbsGm12878Gcn5StdPk.narrowPeak.gz 60.6 Kb (ftp)(http) NARROWPEAK
GSM935415_hg19_wgEncodeSydhTfbsGm12878Gcn5StdSig.bigWig 282.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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