Structural Bridges through Fold Space (Q27317945)

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Evolutionary relationship of two ancient protein superfolds

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21 March 2017

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How significant is a protein structure similarity with TM-score = 0.5?

21 March 2017

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TM-align: a protein structure alignment algorithm based on the TM-score

21 March 2017

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21 March 2017

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The relation between the divergence of sequence and structure in proteins

21 March 2017

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21 March 2017

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21 March 2017

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Mapping the protein universe

21 March 2017

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21 March 2017

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The ASTRAL compendium for protein structure and sequence analysis

21 March 2017

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21 March 2017

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Flexible structure alignment by chaining aligned fragment pairs allowing twists

21 March 2017

1 reference

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Global view of the protein universe

7 April 2017

1 reference

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Automatic classification of protein structures using low-dimensional structure space mappings

28 September 2017

1 reference

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Exploring fold space preferences of new-born and ancient protein superfamilies

28 September 2017

1 reference

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Evolutionary inaccuracy of pairwise structural alignments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Maps of protein structure space reveal a fundamental relationship between protein structure and function

28 September 2017

1 reference

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Protein structures, folds and fold spaces

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

A mathematical framework for protein structure comparison

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

On the evolutionary origins of "Fold Space Continuity": a study of topological convergence and divergence in mixed alpha-beta domains.

28 September 2017

1 reference

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FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately.

28 September 2017

1 reference

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The continuity of protein structure space is an intrinsic property of proteins

28 September 2017

1 reference

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Discrete-continuous duality of protein structure space.

28 September 2017

1 reference

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Advances and pitfalls of protein structural alignment

28 September 2017

1 reference

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Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Is protein classification necessary? Toward alternative approaches to function annotation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

The structure of protein evolution and the evolution of protein structure.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

28 September 2017

A folding space odyssey

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Evolution of protein structural classes and protein sequence families.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Evolution of protein fold in the presence of functional constraints

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Connecting the protein structure universe by using sparse recurring fragments.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

28 September 2017

How old is your fold?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Global mapping of the protein structure space and application in structure-based inference of protein function.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

A global representation of the protein fold space

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Functional fingerprints of folds: evidence for correlated structure-function evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Automatic classification of protein structure by using Gauss integrals.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

The structure of the protein universe and genome evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Expanding protein universe and its origin from the biological Big Bang

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

The natural history of protein domains

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Identification and classification of protein fold families

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Towards a complete map of the protein space based on a unified sequence and structure analysis of all known proteins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

Structural biology: A toolbox for protein design.

31 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004466

Euclidian space and grouping of biological objects

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004466

Integrating multi-attribute similarity networks for robust representation of the protein space

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004466

Fast unfolding of communities in large networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004466

Node centrality in weighted networks: Generalizing degree and shortest paths

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004466

A note on two problems in connexion with graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004466

On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004466

Representation of the Protein Universe using Classifications, Maps, and Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004466

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

ProtoMap: automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570669

10.1371/JOURNAL.PCBI.1004466

28 November 2018

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DOI

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DBLP publication ID

journals/ploscb/EdwardsD15

1 reference

DBLP Dataset 2021-01-02