De novo assembly of a transcriptome from juvenile blue crabs (Callinectes sapidus) following exposure to surrogate Macondo crude oil (Q28647218)

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

object named as

edgeR

R package edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Using Tablet for visual exploration of second-generation sequencing data

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De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

17 March 2017

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

17 March 2017

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17 March 2017

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17 March 2017

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

17 March 2017

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The Sequence Alignment/Map format and SAMtools

17 March 2017

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

17 March 2017

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RNA-Seq: a revolutionary tool for transcriptomics

17 March 2017

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Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

17 March 2017

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Primer3 on the WWW for general users and for biologist programmers

17 March 2017

1 reference

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Detecting selection in the blue crab, Callinectes sapidus, using DNA sequence data from multiple nuclear protein-coding genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

In-depth transcriptome analysis of the red swamp crayfish Procambarus clarkii

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Transcriptome analysis of the differences in gene expression between testis and ovary in green mud crab (Scylla paramamosain)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Widespread inhibition of posttranscriptional splicing shapes the cellular transcriptome following heat shock

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Insights into hepatopancreatic functions for nutrition metabolism and ovarian development in the crab Portunus trituberculatus: gene discovery in the comparative transcriptome of different hepatopancreas stages

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Transcriptome analysis of Portunus trituberculatus in response to salinity stress provides insights into the molecular basis of osmoregulation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

New levels of transcriptome complexity at upper thermal limits in wild Drosophila revealed by exon expression analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Interannual recruitment dynamics for resident and transient marsh species: evidence for a lack of impact by the Macondo oil spill

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Comparative transcriptome analysis of the accessory sex gland and testis from the Chinese mitten crab (Eriocheir sinensis)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

SNP calling by sequencing pooled samples

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Transcriptome analysis of the oriental river prawn, Macrobrachium nipponense using 454 pyrosequencing for discovery of genes and markers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Human microsomal carbonyl reducing enzymes in the metabolism of xenobiotics: well-known and promising members of the SDR superfamily

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Ecological impacts of the deepwater horizon oil spill: implications for immunotoxicity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Arthropod phylogeny: an overview from the perspectives of morphology, molecular data and the fossil record

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Cellular stress and RNA splicing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Marine invertebrate cytochrome P450: emerging insights from vertebrate and insects analogies.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

CYP330A1 and CYP4C39 enzymes in the shore crab Carcinus maenas: sequence and expression regulation by ecdysteroids and xenobiotics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

SM-20, EGL-9, and the EGLN family of hypoxia-inducible factor prolyl hydroxylases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Thiopurine methyltransferase. Aromatic thiol substrates and inhibition by benzoic acid derivatives.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499174

Gene expression of GST and CYP330A1 in lipid-rich and lipid-poor female Calanus finmarchicus (Copepoda: Crustacea) exposed to dispersed oil.

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1739-2

Intermoult duration affects the susceptibility of shore crabs Carcinus maenas (L.) to pyrene and their ability to metabolise it.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1739-2

Gulf of Mexico Hypoxia, A.K.A. “The Dead Zone”

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1739-2

Gene discovery in Carcinus maenas and Homarus americanus via expressed sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1739-2

Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1739-2

Molecular Cloning and Tissue-Specific, Developmental-Stage-Specific, and Hormonal Regulation of IGFBP3 Gene in Zebrafish

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1739-2

Impacts and recovery of the Deepwater Horizon oil spill on vegetation structure and function of coastal salt marshes in the northern Gulf of Mexico

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1739-2

Cloning of two crustacean hyperglycemic hormone isoforms in freshwater giant prawn (Macrobrachium rosenbergii): evidence of alternative splicing

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26162747

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-015-1739-2

1 reference

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-015-1739-2

1 reference

1 reference

PubMed publication ID

26162747

1 reference