An optimization framework for unsupervised identification of rare copy number variation from SNP array data (Q33511862)

27 July 2017

title

An optimization framework for unsupervised identification of rare copy number variation from SNP array data (English)

1 reference

27 July 2017

Mehmet Koyutürk

2

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author name string

Gökhan Yavas

1

1 reference

27 July 2017

Meral Ozsoyoğlu

3

1 reference

27 July 2017

Meetha P Gould

4

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27 July 2017

Thomas LaFramboise

5

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27 July 2017

publication date

23 October 2009

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27 July 2017

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27 July 2017

volume

10

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27 July 2017

issue

10

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27 July 2017

page(s)

R119

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The diploid genome sequence of an Asian individual

27 July 2017

cites work

1 reference

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Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

21 June 2018

1 reference

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Integrated detection and population-genetic analysis of SNPs and copy number variation

21 June 2018

1 reference

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Strong association of de novo copy number mutations with sporadic schizophrenia

21 June 2018

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Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes

21 June 2018

1 reference

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Estimation and assessment of raw copy numbers at the single locus level

21 June 2018

1 reference

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PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

21 June 2018

1 reference

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Copy-number variation in control population cohorts

21 June 2018

1 reference

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Optimization by Simulated Annealing

21 June 2018

1 reference

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Toward accurate high-throughput SNP genotyping in the presence of inherited copy number variation

21 June 2018

1 reference

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Strong association of de novo copy number mutations with autism

21 June 2018

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QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data

21 June 2018

1 reference

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A faster circular binary segmentation algorithm for the analysis of array CGH data

21 June 2018

1 reference

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A chromosome 8 gene-cluster polymorphism with low human beta-defensin 2 gene copy number predisposes to Crohn disease of the colon

21 June 2018

1 reference

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High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping

21 June 2018

1 reference

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PLASQ: a generalized linear model-based procedure to determine allelic dosage in cancer cells from SNP array data

21 June 2018

1 reference

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Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays

21 June 2018

1 reference

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Structural variation in the human genome

21 June 2018

1 reference

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APP locus duplication causes autosomal dominant early-onset Alzheimer disease with cerebral amyloid angiopathy

21 June 2018

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A haplotype map of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

Homozygous deletions and chromosome amplifications in human lung carcinomas revealed by single nucleotide polymorphism array analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

Circular binary segmentation for the analysis of array-based DNA copy number data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

Analysis of array CGH data: from signal ratio to gain and loss of DNA regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

A genome-wide scalable SNP genotyping assay using microarray technology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784334

Loss-of-heterozygosity analysis of small-cell lung carcinomas using single-nucleotide polymorphism arrays

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19849861

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2009-10-10-R119

1 reference

Dimensions Publication ID

27 July 2017

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27 July 2017

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