Histone acetylation and deacetylation in yeast (Q34187792)

31 July 2017

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title

Histone acetylation and deacetylation in yeast (English)

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31 July 2017

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Siavash K Kurdistani

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Michael Grunstein

series ordinal

2

object named as

Michael Grunstein

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31 July 2017

publication date

1 April 2003

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Nature Reviews Molecular Cell Biology

31 July 2017

published in

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31 July 2017

volume

4

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31 July 2017

issue

4

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31 July 2017

page(s)

276-284

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ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS

31 July 2017

cites work

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Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones

31 March 2020

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Nucleosome loss activates yeast downstream promoters in vivo

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Changes in histone gene dosage alter transcription in yeast

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Yeast histone H4 N-terminal sequence is required for promoter activation in vivo

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Roles of histone acetyltransferases and deacetylases in gene regulation

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HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription

31 March 2020

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A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p

31 March 2020

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SAP30, a novel protein conserved between human and yeast, is a component of a histone deacetylase complex

31 March 2020

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Sds3 (suppressor of defective silencing 3) is an integral component of the yeast Sin3[middle dot]Rpd3 histone deacetylase complex and is required for histone deacetylase activity.

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Pho23 is associated with the Rpd3 histone deacetylase and is required for its normal function in regulation of gene expression and silencing in Saccharomyces cerevisiae

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Genome-wide binding map of the histone deacetylase Rpd3 in yeast

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Functional organization of the yeast proteome by systematic analysis of protein complexes

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Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters

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Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3.

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Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo

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Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin

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Targeted recruitment of Rpd3 histone deacetylase represses transcription by inhibiting recruitment of Swi/Snf, SAGA, and TATA binding protein

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TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast

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Gcn4 activator targets Gcn5 histone acetyltransferase to specific promoters independently of transcription

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NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p

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Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase

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Genomewide studies of histone deacetylase function in yeast

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Functional discovery via a compendium of expression profiles

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Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases

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Requirement of Hos2 histone deacetylase for gene activity in yeast

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Dissecting the regulatory circuitry of a eukaryotic genome

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Persistent interactions of core histone tails with nucleosomal DNA following acetylation and transcription factor binding

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Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III

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Molecular biology. Chromatin higher order folding--wrapping up transcription

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Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast

31 March 2020

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Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae

31 March 2020

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Spreading of transcriptional repressor SIR3 from telomeric heterochromatin

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Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3.

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Efficient transcriptional silencing in Saccharomyces cerevisiae requires a heterochromatin histone acetylation pattern

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Genetic analysis of histone H4: essential role of lysines subject to reversible acetylation

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brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2

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The bromodomain: a chromatin-targeting module?

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Structure and ligand of a histone acetyltransferase bromodomain

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Structure and function of a human TAFII250 double bromodomain module

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Deciphering the transcriptional histone acetylation code for a human gene

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The Gcn5 bromodomain co-ordinates nucleosome remodelling

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Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes.

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Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes.

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Global histone acetylation and deacetylation in yeast

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Global role for chromatin remodeling enzymes in mitotic gene expression

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Dynamics of histone acetylation in Saccharomyces cerevisiae

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Interaction of histone acetylases and deacetylases in vivo

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Dynamics of global histone acetylation and deacetylation in vivo: rapid restoration of normal histone acetylation status upon removal of activators and repressors

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To fire or not to fire: origin activation in Saccharomyces cerevisiae ribosomal DNA.

31 March 2020

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A position effect on the time of replication origin activation in yeast

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A yeast origin of replication is activated late in S phase

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Multiple determinants controlling activation of yeast replication origins late in S phase

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Telomeric chromatin modulates replication timing near chromosome ends

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Nucleosomes positioned by ORC facilitate the initiation of DNA replication.

31 March 2020

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Histone acetylation regulates the time of replication origin firing

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Long-distance control of origin choice and replication timing in the human beta-globin locus are independent of the locus control region

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Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator protein

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Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1

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Histone H4 and the maintenance of genome integrity

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Acetylation of histone H4 by Esa1 is required for DNA double-strand break repair.

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NuA4 subunit Yng2 function in intra-S-phase DNA damage response

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Histone H3 and the histone acetyltransferase Hat1p contribute to DNA double-strand break repair

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Abundance of the RSC nucleosome-remodeling complex is important for the cells to tolerate DNA damage in Saccharomyces cerevisiae

31 March 2020

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Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4.

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Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1.

31 March 2020

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Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast

31 March 2020

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Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation

31 March 2020

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Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae.

31 March 2020

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Extremely conserved histone H4 N terminus is dispensable for growth but essential for repressing the silent mating loci in yeast

31 March 2020

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Histone H3 amino terminus is required for telomeric and silent mating locus repression in yeast

31 March 2020

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Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage

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RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae

31 March 2020

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Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin

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Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing

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RNA polymerase II elongation through chromatin

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Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome

31 March 2020

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Elongator, a Multisubunit Component of a Novel RNA Polymerase II Holoenzyme for Transcriptional Elongation

31 March 2020

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A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme

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Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo

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The Core Histone N-Terminal Domains Are Required for Multiple Rounds of Catalytic Chromatin Remodeling by the SWI/SNF and RSC Complexes†

31 March 2020

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SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin

31 March 2020

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Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14.

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Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast

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Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79.

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Active genes are tri-methylated at K4 of histone H3

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Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain

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Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries

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The language of covalent histone modifications

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Histone acetylation in chromatin and chromosomes

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Signaling network model of chromatin

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31 March 2020

Identifiers

DOI

10.1038/NRM1075

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Dimensions Publication ID

31 July 2017

1050994621

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