Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach (Q35876089)

10 August 2017

Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach (English)

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phylogenetic reconciliation

10 August 2017

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1 reference

Yann Ponty

2

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Cedric Chauve

object named as

Cedric Chauve

series ordinal

1

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author name string

João Zanetti

series ordinal

3

1 reference

10 August 2017

16 December 2015

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10 August 2017

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10 August 2017

16 Suppl 19

1 reference

10 August 2017

S6

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Pareto-optimal phylogenetic tree reconciliation

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

Genome-wide probabilistic reconciliation analysis across vertebrates

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

Lateral gene transfer, rearrangement, reconciliation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and loss

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

Rearrangement-based phylogeny using the Single-Cut-or-Join operation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

A flexible ancestral genome reconstruction method based on gapped adjacencies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

Evolution of gene neighborhoods within reconciled phylogenies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

Maximum expected accuracy structural neighbors of an RNA secondary structure

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

An efficient method for exploring the space of gene tree/species tree reconciliations in a probabilistic framework

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

DUPCAR: reconstructing contiguous ancestral regions with duplications

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

Representing a set of reconciliations in a compact way.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4686788

10.1186/1471-2105-16-S19-S6

24 September 2018

Identifiers

DOI

1 reference

PMC publication ID

4686788

Dimensions Publication ID

10 August 2017

0 references

1 reference

PMC publication ID

4686788

10 August 2017

PubMed publication ID

26696141

1 reference

PMC publication ID

4686788