upd is required for stripe-specific expression of pair–rule genes

The similarity of the upd mutant phenotype with that of hop and stat92E, along with the genetic interactions described above, suggest that all three genes are involved in the same developmental process. A prediction of this hypothesis is that mutations in upd would affect the expression of segmentation genes in the same manner as hop and stat92E. Analysis of the expression of pair–rule genes in upd mutant embryos confirms this prediction. The removal of upd results in the stripe-specific loss of expression of several pair–rule genes (Fig. ​(Fig.1).1). Specifically, in upd mutants, the fifth stripes of expression of the genes even-skipped (eve), fushi tarazu (ftz), and runt are reduced or absent. Additionally, the third stripes of eve and ftz, and the second stripe of runt are variably reduced. These stripe-specific effects are identical to those described for maternal loss of hop and stat92E activities (Binari and Perrimon 1994; Hou et al. 1996).

The enhancer elements responsible for control of the third stripe of eve expression have been mapped to a 500-bp element upstream of the eve transcriptional start site (Small et al. 1996). A reporter construct carrying 5.2 kb of eve upstream sequence, including this enhancer region, fused to the lacZ gene drives expression of lacZ in the second, third, and seventh stripes of eve (Goto et al. 1989). Previous work has shown that this fragment contains sequences that bind Stat92E protein in vitro (Yan et al. 1996b). Removal of maternal activity of either hop or stat92E results in the loss of the third stripe from the reporter construct (Hou et al. 1996; Yan et al. 1996b). Similarly, zygotic mutation of upd also causes the specific loss of the third stripe, without affecting the second or seventh stripes (not shown).

The upd gene encodes a 2.2-kb transcript

Because of its likely involvement in JAK signaling, molecular identification of the upd gene was undertaken. Previous genetic mapping placed upd at ~59, in polytene band 17A (Eberl et al. 1992). This is proximal to the Shaker complex but distal to and near CREB and porcupine (porc) (Kadowaki et al. 1996). Strong alleles of upd are embryonic lethal, but weaker alleles show an outstretched (os) phenotype, resulting in adult flies with wings held out away from the body. Allelism of upd and os is based on the failure of zygotic lethal upd alleles to complement the wing phenotype of os alleles (this study and Eberl et al. 1992). For example, combination of the embryonic lethal allele upd^YC43 with the viable allele os^o results in viable adult flies with outstretched wings. To provide additional breakpoints for molecular mapping of the locus, new os alleles were generated by use of X-rays (see Materials and Methods).

A chromosomal walk from the Shaker region was generously made available to us by O. Pongs (Krah-Jentgens 1989). Southern blot analysis of various upd/os mutations and rearrangements in the region was used to delimit the extent of the upd gene (Fig. ​(Fig.2).2). The positions of these mutations indicated that upd must lie within the region designated as 370–415 kb of the chromosomal walk. Candidate transcription units were identified by Northern blot analysis by use of RNA isolated from staged embryo collections of wild-type flies probed with DNA from this 45-kb region. Three nonoverlapping RNAs were identified (Fig. ​(Fig.2).2). Only the 2.2-kb transcript is temporally expressed in a profile consistent with upd function. This RNA is expressed during early zygotic development, the stage at which early segmentation genes are required. Sequencing of the upd^YM55 and upd^YC43 mutant alleles has uncovered nonsense and frameshift mutations, respectively, in the ORF of the 2.2-kb transcript (Fig. ​(Fig.4,4, below; first noted by L. Sefton and T. Cline, pers. comm.). These data, as well as experiments described below, provide substantial evidence to conclude that the 2.2-kb transcript represents upd.

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Figure 2

Molecular map of the upd region. The map indicates the position of phages from the chromosomal walk, in kilobases. The positions of alleles that delimit the extent of the upd locus are shown beneath the chromosome, with bold lines indicating deleted DNA. Broken lines indicate uncertainties in the exact position of breakpoints. The position of transcription units is indicated at bottom. The 1-kb transcript has not been precisely mapped and falls within the indicated area. The 2.5-kb RNA is expressed only during late embryogenesis (after 13 hr), and the 1-kb RNA is present maternally, and again late in embryogenesis. The upd candidate transcript, 2.2 kb, is expressed during early zygotic stages (also see Fig. ​Fig.3).3). CREB is shown for reference (porc is off the map at right). Proximal is to the right. Identification of single site lesions in two upd alleles, upd^YM55 and upd^YC43, confirms the assignment of these mutations to the same complementation group. Because these mutations fail to complement os alleles and only affect the protein encoded by the 2.2-kb transcript (Fig. ​(Fig.4),4), we conclude that os and upd are separable functions of the same locus. The breakpoints of os^4-51-1, os^c18, and os¹⁰⁹ (all os⁻, upd⁺) map at least 13 kb from the 2.2-kb transcript, suggesting that the os phenotype may derive from the disruption of an enhancer that lies far from the 3′ end of the upd transcript.

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Figure 4

Sequence of upd. (A) The sequence of the upd cDNA (λKZ-GR) is shown. The conceptual ORF is shown below the DNA sequence. The presumed signal sequence is denoted by the open box, putative amino-linked glycosylation signals are indicated by the shaded boxes, and AU-rich sequences implicated in mRNA stability are underlined and bold. Intron positions are indicated by inverted open triangles. (B) The predicted protein sequence of D. melanogaster (Dm) Upd is aligned with the predicted protein sequence of the D. ananassae (Da) Om(1E). Amino acid identities are shown in black boxes.

upd embryonic expression is spatially restricted

The spatial distribution of the 2.2-kb transcript is also consistent with a role in embryonic segmentation. In situ hybridization to RNA in whole mount embryos has revealed a dynamic and segmentally repetitive pattern of expression (Fig. ​(Fig.3).3). During the syncytial blastoderm stage, the 2.2-kb transcript is not expressed at levels that are detectable above background. Shortly before cellularization, the RNA becomes abundant, but is absent from the termini, and is restricted to only the trunk of the embryo and a single incomplete head stripe. At cellularization, the trunk expression resolves into ~7 stripes, then into 14 stripes, a phenomenon seen in some pair–rule segmentation genes (Kilchherr et al. 1986; Macdonald et al. 1986).

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Figure 3

Embryonic expression of the upd transcript. Embryonic expression of the upd RNA is highly dynamic. No maternal product can be detected above background (A), but before cellularization, the RNA is expressed broadly throughout the trunk of the embryo and in a dorsal crescent in the head (B). As cellularization proceeds, expression resolves transiently into seven stripes (C,D). During early gastrulation, 14 stripes of expression appear (E). Later expression is largely restricted to the tracheal pits (F,G). Anterior is to the left and views are primarily lateral.

The functional relationship of Upd to Hop and Stat92E is not obvious from the pattern of upd expression. Hop and Stat92E are both maternally required and expressed throughout the blastoderm embryo. In contrast, upd is required zygotically, consistent with its segmental expression and lack of maternal effect phenotype. One possible model is that the hop and stat92E maternal gene products regulate the expression of zygotic upd. This was examined by analyzing the expression pattern of upd in embryos derived from either hop or stat92E germ-line clones. The blastoderm expression pattern of upd was unaltered in these embryos (data not shown) suggesting that Upd acts either upstream or in parallel to the JAK/STAT pathway.

The upd gene encodes a predicted extracellular protein

Sequencing of the largest recovered upd cDNA has identified an ORF that could encode a peptide of 46.8 kD (Fig. ​(Fig.4).4). The conceptual translation product is similar to only one other identified protein, the Om(1E) protein of Drosophila ananassae, a very closely related species (Juni et al. 1996). The proteins from the two species are ~90% identical over two-thirds of their length (Fig. ​(Fig.4B)4B) but diverge at the termini. Little is known about the developmental function of the Om(1E) gene, except that overexpression of the gene causes defects in the adult fly. In the developing eye imaginal disc, expression of Om(1E) causes overproliferation of cells. Also, overexpression in the developing wing imaginal disc causes ectopic bristles, outstretched wings, and deformations of the notum. Interestingly, these phenotypes are identical to defects caused by overexpression of the hop gene in Drosophila melanogaster (Harrison et al. 1995), thus lending further support to the hypothesis that upd is a component of JAK signaling in flies. The only striking structural features of the Om(1E) protein are a potential signal sequence at the amino terminus and several sites for possible amino-linked glycosylation, both of which suggest that the protein is extracellular. These features are also present in D. melanogaster Upd (Fig. ​(Fig.4).4). A simple model for the role of such a protein in JAK signaling is that it codes for a ligand that activates the JAK pathway.

In addition to the ORF, the cDNA contains 226-bp 5′ and 734-bp 3′ [excluding poly(A)] UTRs. Interestingly, these UTRs contain multiple copies of two sequence elements that have been shown to decrease mRNA stability. In the 3′ UTR there are four dispersed ATTTA motifs, which are found in a number of cytokines, lymphokines, and proto-oncogenes (Shaw and Kamen 1986). In addition, a A/TTTGTA motif that was identified in the pair-rule gene ftz (Riedl and Jacobs-Lorena 1996) is present in two copies in the 3′ UTR and one copy in the 5′ UTR of upd. These elements could contribute to the rapidly changing pattern of upd mRNA accumulation found in the early embryo.

Upd is a glycoprotein

Examination of the upd transcript reveals the presence of three putative translation initiation codons. The first (at nucleotide 219) is unlikely to be used because it could only encode a peptide of 38 amino acids. The other two, at nucleotides 227 and 668, would result in proteins sharing the same reading frame but differing in their amino termini. To determine which translation initiation site is preferred in vivo, Drosophila Schneider 2 (S2) cells were transfected with a plasmid representing the entire upd transcript followed by immunoprecipitation and detection of Upd protein by use of antibodies directed against the common portion of the two putative Upd protein products. The only bands detected were 45 kD and larger (as seen in Fig. ​Fig.5B,5B, lane 2), suggesting that the translation initiation codon at nucleotide 227 is used, resulting in a protein with a putative signal sequence.

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Figure 5

Modification and localization of Upd. (A) The size of Upd protein was determined in the presence and absence of tunicamycin. Transfected constructs are empty vector (lanes 1,2), upd cDNA (lanes 3,4), and an amino-terminal truncation of upd that removes the predicted signal sequence (lanes 5,6). (B) The possible cleavage of Upd at the signal sequence was investigated by use of an amino-terminal HA epitope tag. Cells were transfected with empty vector (lane 1), upd cDNA (lane 2), amino-terminal truncation of upd that removes the signal sequence (lane 3), and upd cDNA tagged with a HA epitope at the amino terminus (lanes 4,5). Protein was immunoprecipitated with rabbit α-upd, electrophoresed, blotted, and detected with rat α-upd (lanes 1–4) or with α-HA (lane 5). A control shows HA antibody detection of HA-tagged Stat92E protein (lane 6) HA expression vector background (lane 7). (C) Cells were transfected with vector alone (lanes 1,2,7,8), upd cDNA (lanes 3,4,9,10), or upd missing the signal sequence (Δss) (lanes 5,6,11, 12). Upd protein was recovered from either the ECM (lanes 1–6) or the medium (lanes 7–12), in the presence or absence of heparin, by immunoprecipitation with rabbit α-upd and detection with rat α-upd.

The presence of a putative signal sequence and five amino-linked glycosylation sites in upd suggests that it is post-translationally modified in the secretory pathway. To examine the possibility of amino-linked glycosylation, a mammalian expression plasmid containing upd was transfected into human 293T cells. The cells were metabolically labeled with [³⁵S]methionine in the presence or absence of tunicamycin, a potent inhibitor of amino-linked glycosylation. Upd protein was recovered by immunoprecipitation, and the sizes of resultant Upd proteins were compared. Several bands of 45–65 kD were seen in the untreated cells, whereas only the smallest 45-kD band was observed when the cells were treated with tunicamycin (Fig. ​(Fig.5A).5A). The absence of the larger products in the treated cells suggests that the larger proteins are glycosylated forms. The presence of multiple forms of Upd in the untreated cells most likely reflects partially glycosylated intermediates. These results suggest that Upd contains a functional signal sequence that targets Upd to the endoplasmic reticulum for glycosylation and secretion. Therefore, removal of the putative signal sequence should eliminate targeting of the Upd protein to the endoplasmic reticulum and prevent glycosylation. As predicted, when the signal sequence was removed from Upd, only the 45-kD band was observed (Fig. ​(Fig.5A,5A, lane 5).

Upd is localized to the extracellular matrix

Comigration of the smallest Upd protein species with upd lacking a signal sequence suggests that the signal sequence is normally cleaved in the mature protein. To examine cleavage of the signal sequence, a plasmid was constructed in which a hemagglutinin (HA) epitope tag was fused to the amino terminus of Upd. Previous work has shown that amino-terminal extensions on signal sequences do not abrogate in vivo function (Rottier et al. 1987). The plasmid encoding the tagged Upd was transfected into S2 cells and the resulting protein was precipitated with anti-Upd antisera. The precipitated protein was then detected by Western blotting by use of either anti-Upd or anti-HA antisera. As seen in Figure ​Figure5B,5B, the protein was detectable with the anti-Upd serum (lane 4), but not with the anti-HA antisera (lane 5). Activity of the anti-HA antibody is shown in lane 6, where it is capable of detecting epitope-tagged Stat92E protein. These results suggest that the amino terminus of Upd, including the HA tag, is proteolytically removed.

The presence of modifications to Upd that take place in the secretory pathway are consistent with the hypothesis that Upd is normally secreted. However, in initial experiments, Upd could not be detected in the medium of transfected cells despite its high level of expression. Therefore, to determine the localization of Upd, culture medium and extracellular matrix (ECM) were harvested separately from upd-transfected S2 cells and tested for the presence of Upd. To avoid contamination of the ECM fraction with cells and cell fragments, culture dishes were washed extensively prior to harvesting. The majority of Upd protein was found to be associated specifically with the ECM, with only a small quantity free in the medium (Fig. ​(Fig.55C).

Binding of proteins to the ECM is often mediated by glycosaminoglycans, such as heparan sulfate. Therefore, free heparin was added to the medium from upd-transfected cells to determine whether it could prevent association of Upd with the ECM. Lanes 4 and 10 of Figure ​Figure5C5C show that addition of heparin releases nearly all of the Upd protein into the medium. Ability of heparin to compete with ECM suggests that Upd normally binds to the ECM through association with glycosaminoglycans. As expected, Upd lacking a signal sequence is not secreted and cannot be detected in either the medium or ECM (Fig. ​(Fig.5C,5C, lanes 5,6,11,12).

Upd is a secreted protein

The secreted nature of Upd, and its ability to stimulate JAK phosphorylation strongly suggest a model in which Upd encodes a ligand for the JAK/STAT pathway. Further, Upd is associated with the ECM, thus limiting diffusion and providing spatial restriction to pathway activity. Whereas a role for Upd as a ligand for the JAK pathway is the simplest explanation for these data, other models cannot be excluded. For example, it is possible that Upd is required to activate the true ligand for the pathway. However, Upd has no homology to proteases or other molecules that may be involved in such activation. Alternately, Upd could activate another signaling pathway that ultimately results in activation of Hop. The latter model seems unlikely because of the short time window between the onset of upd expression and the onset of eve stripes three and five expression in the embryo. Only minutes separate the zygotic expression of upd and eve, thus providing little time for the activation of an intermediate pathway. For these reasons, we favor the simplest model, in which Upd is the ligand for the JAK pathway, as diagrammed in Figure ​Figure7.7. Upd presumably binds to a yet unknown receptor that would associate with Hop. Receptor aggregation would stimulate Hop trans-phosphorylation, thereby activating Hop. The Stat92E latent transcription factor would then be recruited to the activated receptor complex, phosphorylated by activated Hop, dimerize, and translocate to the nucleus. The active dimers of Stat92E presumably then directly stimulate transcription of a set of downstream genes, including eve, in a spatially restricted manner. Previously, a regulatory fragment of the eve gene that controls expression of the third stripe was identified as a target of the JAK/STAT pathway. This fragment carries sequences similar to binding sites for mammalian STATs, which bind the Stat92E protein in vitro (Yan et al. 1996b). As proposed previously (Hou et al. 1996; Yan et al. 1996b), we assume that the effects of the pathway on eve expression arise from direct binding of Stat92E to eve enhancers, resulting in activation of transcription of the gene. Regulation of other pair-rule genes may be equally direct, though it is known that Eve protein also regulates transcription of other pair-rule genes. Thus, it is possible that effects of JAK pathway mutations on some of the pair-rule genes are secondary to a reduction in Eve activity.

The molecular nature of Upd is consistent with the previously reported local noncell autonomy associated with upd mutations (Gergen and Wieschaus 1986). Gergen and Wieschaus generated embryonic mosaics of upd, whereby patches of upd mutant cells were adjacent to wild-type territory. From their analyses they concluded that upd is largely cell autonomous, but they noticed that upd mutant cells immediately adjacent to the wild-type cells could generate a normal pattern. The requirement for close proximity of the rescuing cells indicates that the diffusible activity of the Upd product has a limited range. This is consistent with the tight association of the Upd protein with the ECM, tethering the ligand near its source. Anchoring of Upd to the ECM would provide a simple mechanism to spatially limit the activity of the protein and consequent activation of the JAK/STAT pathway. This situation is in contrast to other secreted ligands presumably found in the perivitelline space at about the same developmental stage. For example, the ligands of the Toll and Torso receptors have the ability to freely diffuse over long distances (Stein and Nüsslein-Volhard 1992; Casanova and Struhl 1993).

The role of Upd in embryonic segmentation

Extensive studies of the mechanisms underlying segmentation of the Drosophila embryo have led to a comprehensive model of the sequential steps involved in the establishment of the body plan (Ingham 1988; St Johnston and Nüsslein-Volhard 1992). Maternal activities have been shown to provide cues that direct the expression of specific factors along the anteroposterior (A/P) and dorsoventral axes. Along the A/P axis, these transcription factors, encoded by gap genes, regulate the spatial and temporal expression of other transcription factors encoded by pair-rule genes, which are subsequently involved in the regulation of segment polarity genes that define cell states within every segment. Upd in the JAK/STAT pathway is the earliest known secreted zygotic factor to act along the A/P axis. With the exception of a tenascin-like molecule that acts as a secondary pair–rule gene (Baumgartner et al. 1994), the next known secreted factors involved in A/P patterning are encoded by the segment polarity genes wingless (wg) and hedgehog (hh). Both Wg and Hh encode signaling molecules involved in the establishment and maintenance of the parasegmental boundaries of the developing embryo (for review, see Ingham 1988). Their expression is initiated after cellularization and they are required for maintenance of boundaries throughout embryogenesis.

Our findings that a secreted factor, Upd, activates the JAK/STAT signaling pathway to regulate the expression of pair rule genes such as eve, ftz, and runt, must be integrated into this model. To understand the function of the JAK/STAT pathway, we have used the regulation of eve stripe 3 expression as a paradigm (for review, see Hou and Perrimon 1997). The anterior and posterior borders of eve stripe 3 are set through repression by the Hb and Kni proteins, respectively. Because the Hb and Kni-binding sites are involved in defining the sharp on/off borders of gene expression, and the STAT-binding sites are involved in activating transcription, we have proposed that the JAK/STAT signaling pathway does not need to be spatially activated within this domain (Hou et al. 1996; for review, see Hou and Perrimon 1997). Thus, the JAK/STAT pathway may not be instructive per se but simply play a role in the up-regulation of specific genes, such as eve, that contain STAT binding sites in their regulatory regions. According to this model, the unusual mutant phenotype associated with loss of JAK/STAT activity would represent the cumulative defects in the expression of various segmentation genes.

Our analysis in the early embryo has shown that upd is initially expressed in a broad central domain immediately prior to cellularization, the stage when eve is regulated by the JAK/STAT pathway. This is consistent with the previously proposed model that the pathway is not instructive, but provides a ubiquitous system of activation. Later restriction of upd expression is somewhat enigmatic. The striped expression pattern of upd, together with the observations that Upd activity is mainly cell autonomous and that Upd binds to ECM suggest that the JAK/STAT pathway is locally activated in the blastoderm embryo. This suggests that perhaps, in contrast to the previous model, localized activation of this pathway is instrumental to proper segmentation. Analysis of Upd protein distribution and misexpression studies of Upd in the early embryo should provide critical tests to distinguish between these alternative hypotheses.

Specificity of the JAK pathway

In vertebrates, the JAK/STAT pathway can be activated by multiple ligand/receptor combinations. In addition to cytokine receptors, receptor tyrosine kinases such as the PDGFR, EGFR, and Eyk have been shown to regulate the activity of both JAK and STAT molecules (Vignais et al. 1996; Zong et al. 1996; Yamauchi et al. 1997). If the JAK/STAT pathway was activated by additional signaling pathways, one would expect that the phenotype of either hop or stat92E embryos would be more severe than the phenotype of upd mutant embryos. Because hop, stat92E, and upd mutants have similar phenotypes, we conclude that Upd is likely to be the predominant or sole activator of the JAK/STAT pathway during embryogenesis.

The JAK pathway in Drosophila has additional roles during zygotic development. The pathway is involved in blood cell development, differentiation of various adult structures, posture of the adult wing, spermatogenesis, and oogenesis (this work, Perirmon and Mahowald 1986; Harrison et al. 1995; Luo et al. 1995; Yan et al. 1996a). The genetic interaction studies described here suggest a role for Upd in adult wing posture and in oogenesis, but roles in other developmental processes have not yet been investigated. Further analyses will be required to determine whether Upd is the only ligand in all these tissues, or whether other activators can also stimulate the JAK/STAT pathway.

Analysis of embryos

Embryos were collected from y w and Df(1)os^1A/ FM7, and from females with germ-line mutant clones for hop^c111 or stat92E^P1681 generated as described previously (Binari and Perrimon 1994; Hou et al. 1996). Embryonic cuticles were prepared by the Hoyer’s mountant method (Ashburner 1989) and photographed by dark-field microscopy.

Localization of RNA by in situ hybridization and protein by immunohistochemical staining in y w and mutant strains upd^YM55, upd^YC43, and Df(1)os^1A was performed as described previously (Binari and Perrimon 1994; Hou et al. 1996). Stained embryos were mounted in 70% glycerol and photographed by use of differential interference contrast (DIC) microscopy.

Molecular identification of upd

The limits of the upd locus were determined by Southern analysis of upd and os alleles. The distal limit of upd is based on the position of the breakpoint in Df(1)os^4-51-1 at ~370–380 kb in the Shaker complex chromosomal walk (see Fig. ​Fig.2).2). The proximal limit was mapped by the position of breakpoints in the segmental aneuploidy, T(1;Y)v29, and Df(1)os^UE69 (Ferrus et al. 1990; Eberl et al. 1992) at ~410–415 kb. Restriction fragment length polymorphism (RFLP) analysis of recombinants between Df(1)os^UE69 and porc^PB16 is consistent with this mapping (N. Perrimon, D.A. Harrison, and E. Wilder, unpubl.).

DNA from λ phages M1I1, M33, E721, and EA1 were used to probe Northern blots of RNA from embryonic stages (0–1, 1–5, 5–9, and 9–13 hr). A 4-kb BamHI fragment was subcloned from the M33 phage (pUpd9-4), and labeled by random priming to probe cDNA libraries. Libraries used were a 4- to 8-hr embryonic cDNA library cloned into a plasmid (Brown and Kafatos 1988) and a 8- to 12-hr embryonic cDNA library cloned in λ phage (Zinn et al. 1988). A single clone was recovered from the phage library, whereas three clones were recovered from the plasmid library. All three plasmid clones were identical, whereas the phage clone contained a slightly longer 5′ end. Sequencing of clones was performed with the Sequenase and Thermo-Sequenase kits (Amersham/ U.S. Biochemical). Sequence from cDNAs was compared with that of the λM33 genomic clone. DNA from flies with the EMS-induced upd^YM55 and upd^YC43 alleles carried over FM7 was PCR amplified and sequenced to identify the specific lesions associated with those mutations.

Detection of glycosylation

A 761-bp SacI–EcoRI fragment of the upd cDNA clone pBS-GR51 was cloned into the SacI–EcoRI sites of pRSETB (Invitrogen) to encode a fusion of His-tagged protein with the carboxyl terminus of Upd. The fusion protein was produced and prepared as described previously (Harrison et al. 1995), and was injected into both rats and rabbits to stimulate an immunological response.

293T cells in 60-mm plates were transfected with empty or upd-containing plasmids under the control of the CMV promoter in the vector pCG (Natesan et al. 1997) by use of lipofectamine (Life Technologies) according to manufacturer’s instructions. The following day, cells were metabolically labeled by the addition of 70 μCi/plate of Express labeling mix (Dupont-NEN) for 6.5 hr. Plus tunicamycin samples were treated with 3 μg/ml tunicamycin for the same time period. Cells were lysed in RIPA buffer [150 mm NaCl, 50 mm Tris (pH 8.0), 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, 1 mm EGTA] plus 0.5 mm PMSF, 20 μg/ml aprotinin solution (Sigma), 3 μg/ml leupeptin, 3 μg/ml pepstatin and spun. Upd protein was immunoprecipitated with rabbit anti-upd antibody and collected and washed after the addition of Gammabind G–Sepharose (Pharmacia). Eluted immunoprecipitates were run on 4%–20% SDS–polyacrylamide Novex gels that were fixed, treated with Amplify (Amersham), and dried prior to autoradiography.

Protein localization

Schneider cells were transfected in 60 mm plates with constructs containing upd in the pD vector (Natesan and Gilman 1995) or empty pD vector by calcium phosphate coprecipitation (Di Nocera and Dawid 1983). HA-tagged constructs contained the sequence YPYDVPDYA at the extreme amino terminus (HA–upd) or carboxyl terminus (Stat92E-HA) of the ORF. In cases in which medium was assayed for the presence of upd protein, cells were refed with Sf-900 II Serum-Free Medium (Life Technologies) the day after transfection with or without the addition of 50 μg/ml heparin (Sigma H-9399). A day later, medium was collected by spinning out cells, and concentrated in Centriprep 10,000 MWCO ultrafiltration devices (Amicon). Transfected cells were harvested 2 days after transfection by washing twice in ice-cold PBS followed by lysis in RIPA buffer plus protease inhibitors prepared as above. To prepare ECM, plates were scraped and washed with 2 m urea followed by several washes with PBS prior to harvesting with 90°C Laemmli sample buffer (Bradley and Brown 1990).

For immunoprecipitation of Upd from cell lysates, equal amounts of protein were used for all samples. Protein concentrations in medium and ECM were below detection limits, and for these samples, equivalent volumes of medium or number of plates were used for comparisons. Immunoprecipitations were performed as above with rabbit anti-Upd or mouse anti-HA monoclonal antibody (BabCO). Eluted immunoprecipitates were run on 4%–20% Novex gels and blotted to PVDF membranes (Bio-Rad). Detection of untagged Upd proteins was with rat anti-Upd antibody, and of HA-tagged proteins, with mouse anti-HA monoclonal antibody (BABCO), diluted 1/1000 followed by HRP-conjugated secondary antibodies (Bio-Rad) diluted 1/10,000 and ECL (Dupont–NEN) detection.

We thank O. Pongs for his generous gift of λ phages, R. Nusse for Clone 8 cells, M. Frasch for antibodies, and the Bloomington Stock Center for fly lines. We thank T. Cline and L. Sefton for sharing data prior to publication. This work was supported by fellowships from the Damon Runyon/Walter Winchell Cancer Research Fund (DRG1154) and The Medical Foundation/Charles A. King Trust (DAH), by the National Science Foundation (IBN9723944 to D.A.H.), by the Howard Hughes Medical Institute (N.P.), and by the National Institutes of Health (CA45642 to M.G.).

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