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Oryza sativa (Japanese rice) - GCA_001433935.1 (IRGSP-1.0) ▼

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View karyotype Example region

Genome assembly: IRGSP-1.0 (GCA_001433935.1)

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Example gene Example transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

Download FASTA, GTF or GFF3 files for genes, cDNAs, ncRNA, proteins

Statistics

Summary

AssemblyIRGSP-1.0, INSDC Assembly GCA_001433935.1, Oct 2015
Base Pairs375,049,285
Golden Path Length375,049,285
Assembly providerIRGSP
Annotation providerRAP-DB
Annotation methodImport
Genebuild startedSep 2022
Genebuild released
Genebuild last updated/patchedJun 2019
Database version110.1

Gene counts

Coding genes35,806
Non coding genes3,180
Small non coding genes3,085
Long non coding genes95
Pseudogenes7
Gene transcripts45,973

Other

FGENESH gene prediction46,238
TE-related Gene (MSU)17,272