Chemical modification-assisted bisulfite sequencing (CAB-Seq) for 5-carboxylcytosine detection in DNA. (Q37055345)

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3 March 2020

title

Chemical modification-assisted bisulfite sequencing (CAB-Seq) for 5-carboxylcytosine detection in DNA (English)

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3 March 2020

2

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3 March 2020

author name string

Xingyu Lu

1

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3 March 2020

Keith Szulwach

3

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3 March 2020

Zhipeng Wang

4

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3 March 2020

Payton Weidenbacher

5

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3 March 2020

Peng Jin

6

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3 March 2020

Chuan He

7

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3 March 2020

language of work or name

English

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publication date

17 June 2013

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Journal of the American Chemical Society

3 March 2020

published in

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3 March 2020

volume

135

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3 March 2020

issue

25

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3 March 2020

page(s)

9315-9317

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Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming

3 March 2020

cites work

1 reference

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Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase

29 September 2017

1 reference

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Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

29 September 2017

1 reference

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Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

DNA demethylation dynamics

29 September 2017

1 reference

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Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites

29 September 2017

1 reference

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Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA

29 September 2017

1 reference

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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

The discovery of 5-formylcytosine in embryonic stem cell DNA.

29 September 2017

1 reference

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Detection of 5-hydroxymethylcytosine in DNA by transferring a keto-glucose by using T4 phage β-glucosyltransferase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates

29 September 2017

1 reference

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Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Bioorthogonal chemistry: fishing for selectivity in a sea of functionality

29 September 2017

1 reference

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Tunable interplay between epidermal growth factor and cell-cell contact governs the spatial dynamics of epithelial growth.

29 September 2017

1 reference

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The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Visualizing metabolically labeled glycoconjugates of living cells by copper-free and fast huisgen cycloadditions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Genomic DNA methylation: the mark and its mediators

29 September 2017

1 reference

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Peptidotriazoles on solid phase: [1,2,3]-triazoles by regiospecific copper(i)-catalyzed 1,3-dipolar cycloadditions of terminal alkynes to azides

29 September 2017

1 reference

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Click Chemistry: Diverse Chemical Function from a Few Good Reactions

29 September 2017

1 reference

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A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Site-directed mutagenesis of the χ subunit of DNA polymerase III and single-stranded DNA-binding protein of E. coli reveals key residues for their interaction

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

DNA-binding factors shape the mouse methylome at distal regulatory regions

4 September 2018

1 reference

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ANIBAL, stable isotope-based quantitative proteomics by aniline and benzoic acid labeling of amino and carboxylic groups.

4 September 2018

1 reference

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Mechanism and Stem-Cell Activity of 5-Carboxycytosine Decarboxylation Determined by Isotope Tracing

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727251

4 December 2018

Identifiers

DOI

10.1021/JA4044856

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23758547%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

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3 March 2020

PubMed publication ID

23758547

1 reference