Cellosaurus GM12878 (CVCL_7526)
Cell line name | GM12878 | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Synonyms | GM-12878 | ||||||||||||||||||||
Accession | CVCL_7526 | ||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: GM12878 (RRID:CVCL_7526) | ||||||||||||||||||||
Comments | Part of: CEPH/Utah pedigree cell line collection. Part of: ENCODE project common cell types; tier 1. Part of: Genetic Testing Reference Material (GeT-RM) samples. Part of: Genome in a Bottle (GIAB) consortium samples. Part of: International Genome Sample Resource (1000 genomes project) cell lines. Registration: CEPH Families Reference Panel; 146302. Registration: National Institute of Standards and Technology, Standard Reference Materials; HG001. Population: Caucasian; Utah residents with ancestry from Northern and Western Europe. Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV). Omics: CAGE-seq analysis. Omics: CTCF ChIP-seq epigenome analysis. Omics: H3K27ac ChIP-seq epigenome analysis. Omics: H3K27me3 ChIP-seq epigenome analysis. Omics: H3K36me3 ChIP-seq epigenome analysis. Omics: H3K4me1 ChIP-seq epigenome analysis. Omics: H3K4me2 ChIP-seq epigenome analysis. Omics: H3K4me3 ChIP-seq epigenome analysis. Omics: H3K79me2 ChIP-seq epigenome analysis. Omics: H3K9ac ChIP-seq epigenome analysis. Omics: H3K9me3 ChIP-seq epigenome analysis. Omics: H4K20me1 ChIP-seq epigenome analysis. Omics: YY1 ChIP-seq epigenome analysis. Omics: CNV analysis. Omics: Deep exome analysis. Omics: Deep proteome analysis. Omics: DNA methylation analysis. Omics: Genome sequenced. Omics: Mitochondrial genome sequenced. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Omics: Transcriptome analysis by RNAseq. Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178. | ||||||||||||||||||||
Sequence variations |
| ||||||||||||||||||||
HLA typing | Source: PubMed=27792722
| ||||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||||
Hierarchy | Children:
| ||||||||||||||||||||
Sex of cell | Female | ||||||||||||||||||||
Age at sampling | Age unspecified | ||||||||||||||||||||
Category | Transformed cell line | ||||||||||||||||||||
Web pages | http://genome.ucsc.edu/ENCODE/protocols/cell/human/GM12878_protocol.pdf http://www.completegenomics.com/documents/PublicGenomes.pdf https://www.ncbi.nlm.nih.gov/variation/tools/get-rm/ https://www.cephb.fr/en/familles_CEPH.php | ||||||||||||||||||||
Publications | PubMed=17122850; DOI=10.1038/nature05329; PMCID=PMC2669898 PubMed=19043577; DOI=10.1371/journal.pgen.1000287; PMCID=PMC2583954 PubMed=20856902; DOI=10.1371/journal.pbio.1000480; PMCID=PMC2939022 PubMed=21418647; DOI=10.1186/gb-2011-12-3-r25; PMCID=PMC3129675 PubMed=23325432; DOI=10.1101/gr.147942.112; PMCID=PMC3589544 PubMed=23676674; DOI=10.1038/nature12223; PMCID=PMC3789121 PubMed=24185094; DOI=10.1038/nbt.2728; PMCID=PMC4180835 PubMed=24380390; DOI=10.1186/gb-2013-14-12-r148; PMCID=PMC4056453 PubMed=26719794; DOI=10.1186/s13742-015-0106-1; PMCID=PMC4696294 PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005; PMCID=PMC4695224 PubMed=27792722; DOI=10.1371/journal.pcbi.1005151; PMCID=PMC5085092 CLPUB00604 PubMed=29116076; DOI=10.1038/s41467-017-01467-7; PMCID=PMC5677018 PubMed=29431738; DOI=10.1038/nbt.4060; PMCID=PMC5889714 PubMed=30485824; DOI=10.1016/j.celrep.2018.10.096; PMCID=PMC6481945 PubMed=31273215; DOI=10.1038/s41597-019-0116-4; PMCID=PMC6609777 PubMed=31401124; DOI=10.1016/j.jmoldx.2019.06.007; PMCID=PMC6854474 PubMed=36094314; DOI=10.1128/JVI.00739-22; PMCID=PMC9517713 | ||||||||||||||||||||
Cross-references | |||||||||||||||||||||
Cell line collections (Providers) | Coriell; GM12878 | ||||||||||||||||||||
Cell line databases/resources | CLO; CLO_0022851 | ||||||||||||||||||||
Anatomy/cell type resources | BTO; BTO:0006353 | ||||||||||||||||||||
Biological sample resources | 4DN; 4DNSRH17RFKR
4DN; 4DNSRVWZS4XO BioSample; SAMN00000339 BioSample; SAMN00801888 ENCODE; ENCBS004QBB ENCODE; ENCBS011ZCV ENCODE; ENCBS036HXX ENCODE; ENCBS057BBL ENCODE; ENCBS058GRO ENCODE; ENCBS068RRP ENCODE; ENCBS083XJQ ENCODE; ENCBS089RNA ENCODE; ENCBS090RNA ENCODE; ENCBS095RNA ENCODE; ENCBS096RNA ENCODE; ENCBS101KOX ENCODE; ENCBS105ILZ ENCODE; ENCBS110ENC ENCODE; ENCBS112GEV ENCODE; ENCBS127ZRH ENCODE; ENCBS135VMF ENCODE; ENCBS155GIM ENCODE; ENCBS158BMT ENCODE; ENCBS158FOT ENCODE; ENCBS160DJZ ENCODE; ENCBS162RYJ ENCODE; ENCBS165XVU ENCODE; ENCBS166BUX ENCODE; ENCBS175OMJ ENCODE; ENCBS176TMN ENCODE; ENCBS178ZIG ENCODE; ENCBS195IGI ENCODE; ENCBS195XMM ENCODE; ENCBS197KWD ENCODE; ENCBS202PFA ENCODE; ENCBS217CXJ ENCODE; ENCBS229YYL ENCODE; ENCBS232JAP ENCODE; ENCBS236ZAD ENCODE; ENCBS237JOI ENCODE; ENCBS241TQO ENCODE; ENCBS256VGP ENCODE; ENCBS260WJQ ENCODE; ENCBS263DSS ENCODE; ENCBS268UXF ENCODE; ENCBS272IWA ENCODE; ENCBS276RPG ENCODE; ENCBS280SII ENCODE; ENCBS330WEW ENCODE; ENCBS332CFX ENCODE; ENCBS337LQM ENCODE; ENCBS338MMX ENCODE; ENCBS339VHO ENCODE; ENCBS348KQK ENCODE; ENCBS350HSZ ENCODE; ENCBS356XKT ENCODE; ENCBS360VGQ ENCODE; ENCBS361VFY ENCODE; ENCBS381VEV ENCODE; ENCBS383ZNJ ENCODE; ENCBS386THJ ENCODE; ENCBS389LEA ENCODE; ENCBS397JTN ENCODE; ENCBS411YBT ENCODE; ENCBS421UOG ENCODE; ENCBS434ZBE ENCODE; ENCBS436SAI ENCODE; ENCBS443JGY ENCODE; ENCBS446GJK ENCODE; ENCBS446LSH ENCODE; ENCBS460NBS ENCODE; ENCBS482WRI ENCODE; ENCBS487GLA ENCODE; ENCBS488GLI ENCODE; ENCBS492CVI ENCODE; ENCBS494ENC ENCODE; ENCBS495ENC ENCODE; ENCBS495SKR ENCODE; ENCBS496ENC ENCODE; ENCBS501RRP ENCODE; ENCBS502UVH ENCODE; ENCBS504ZJS ENCODE; ENCBS506MRD ENCODE; ENCBS519VWT ENCODE; ENCBS538MCC ENCODE; ENCBS540DKD ENCODE; ENCBS543LGX ENCODE; ENCBS571ZAL ENCODE; ENCBS579VBW ENCODE; ENCBS584ZED ENCODE; ENCBS588GPN ENCODE; ENCBS594YOH ENCODE; ENCBS595CWJ ENCODE; ENCBS603ZPO ENCODE; ENCBS607NAA ENCODE; ENCBS608PGT ENCODE; ENCBS609AMN ENCODE; ENCBS621MYU ENCODE; ENCBS630AAA ENCODE; ENCBS631AAA ENCODE; ENCBS632AAA ENCODE; ENCBS638AZC ENCODE; ENCBS644QQI ENCODE; ENCBS657BPX ENCODE; ENCBS657FSS ENCODE; ENCBS664ZGZ ENCODE; ENCBS676TGQ ENCODE; ENCBS681NDP ENCODE; ENCBS685XZU ENCODE; ENCBS692APS ENCODE; ENCBS694MFZ ENCODE; ENCBS705AAA ENCODE; ENCBS706AAA ENCODE; ENCBS707AAA ENCODE; ENCBS708AAA ENCODE; ENCBS709AAA ENCODE; ENCBS710AAA ENCODE; ENCBS715VCP ENCODE; ENCBS727AAA ENCODE; ENCBS728AAA ENCODE; ENCBS729AAA ENCODE; ENCBS730AAA ENCODE; ENCBS734TTU ENCODE; ENCBS755AAA ENCODE; ENCBS756AAA ENCODE; ENCBS757AAA ENCODE; ENCBS758AAA ENCODE; ENCBS759AAA ENCODE; ENCBS760AAA ENCODE; ENCBS761AAA ENCODE; ENCBS762AAA ENCODE; ENCBS763AAA ENCODE; ENCBS771XJW ENCODE; ENCBS772FMA ENCODE; ENCBS773HZT ENCODE; ENCBS778MKB ENCODE; ENCBS779LIK ENCODE; ENCBS791FEH ENCODE; ENCBS792AAA ENCODE; ENCBS793AAA ENCODE; ENCBS794AAA ENCODE; ENCBS795AAA ENCODE; ENCBS796AAA ENCODE; ENCBS798AAA ENCODE; ENCBS799AAA ENCODE; ENCBS800AAA ENCODE; ENCBS801AAA ENCODE; ENCBS801TVI ENCODE; ENCBS802BKO ENCODE; ENCBS802GDX ENCODE; ENCBS803QIM ENCODE; ENCBS812YDO ENCODE; ENCBS813RJD ENCODE; ENCBS817AAA ENCODE; ENCBS818AAA ENCODE; ENCBS819AAA ENCODE; ENCBS826OYW ENCODE; ENCBS830CIQ ENCODE; ENCBS830FPU ENCODE; ENCBS831YAX ENCODE; ENCBS837QOG ENCODE; ENCBS839NNF ENCODE; ENCBS842EZN ENCODE; ENCBS844IZD ENCODE; ENCBS845AAA ENCODE; ENCBS845TXY ENCODE; ENCBS846AAA ENCODE; ENCBS849IVF ENCODE; ENCBS853AAA ENCODE; ENCBS857VGC ENCODE; ENCBS859QLM ENCODE; ENCBS866OKF ENCODE; ENCBS878MAF ENCODE; ENCBS879WMA ENCODE; ENCBS882WSF ENCODE; ENCBS886YKM ENCODE; ENCBS890IXM ENCODE; ENCBS891HAO ENCODE; ENCBS892YZW ENCODE; ENCBS900QPF ENCODE; ENCBS901DKW ENCODE; ENCBS907LID ENCODE; ENCBS913AHD ENCODE; ENCBS913NDQ ENCODE; ENCBS917LTR ENCODE; ENCBS926QYK ENCODE; ENCBS934CYZ ENCODE; ENCBS937MAM ENCODE; ENCBS950FXN ENCODE; ENCBS965YSG ENCODE; ENCBS976FSZ ENCODE; ENCBS978YID ENCODE; ENCBS981DLH ENCODE; ENCBS985PRF IGSR; NA12878 | ||||||||||||||||||||
CRISP screens repositories | BioGRID_ORCS_Cell_line; 203 | ||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54846175 | ||||||||||||||||||||
Experimental variables resources | EFO; EFO_0002784 | ||||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-1511
ArrayExpress; E-MTAB-5835 GEO; GSM112568 GEO; GSM112871 GEO; GSM188847 GEO; GSM291698 GEO; GSM421093 GEO; GSM472901 GEO; GSM472902 GEO; GSM472931 GEO; GSM489277 GEO; GSM489278 GEO; GSM489279 GEO; GSM489290 GEO; GSM489291 GEO; GSM489292 GEO; GSM651106 GEO; GSM651107 GEO; GSM660003 GEO; GSM660210 GEO; GSM660416 GEO; GSM733642 GEO; GSM733664 GEO; GSM733677 GEO; GSM733679 GEO; GSM733708 GEO; GSM733736 GEO; GSM733752 GEO; GSM733758 GEO; GSM733767 GEO; GSM733769 GEO; GSM733771 GEO; GSM733772 GEO; GSM736496 GEO; GSM736620 GEO; GSM749669 GEO; GSM749704 GEO; GSM749706 GEO; GSM803338 GEO; GSM803341 GEO; GSM803342 GEO; GSM803347 GEO; GSM803349 GEO; GSM803350 GEO; GSM803355 GEO; GSM803356 GEO; GSM803362 GEO; GSM803363 GEO; GSM803386 GEO; GSM803387 GEO; GSM803388 GEO; GSM803389 GEO; GSM803390 GEO; GSM803391 GEO; GSM803392 GEO; GSM803406 GEO; GSM803411 GEO; GSM803416 GEO; GSM803420 GEO; GSM803434 GEO; GSM803477 GEO; GSM803485 GEO; GSM803496 GEO; GSM803508 GEO; GSM803509 GEO; GSM803510 GEO; GSM803511 GEO; GSM803531 GEO; GSM803532 GEO; GSM803534 GEO; GSM803537 GEO; GSM803538 GEO; GSM816665 GEO; GSM822270 GEO; GSM822290 GEO; GSM822312 GEO; GSM862026 GEO; GSM862027 GEO; GSM862028 GEO; GSM862029 GEO; GSM862030 GEO; GSM862031 GEO; GSM923451 GEO; GSM935277 GEO; GSM935283 GEO; GSM935294 GEO; GSM935301 GEO; GSM935309 GEO; GSM935316 GEO; GSM935330 GEO; GSM935331 GEO; GSM935332 GEO; GSM935345 GEO; GSM935349 GEO; GSM935375 GEO; GSM935376 GEO; GSM935377 GEO; GSM935378 GEO; GSM935386 GEO; GSM935409 GEO; GSM935412 GEO; GSM935415 GEO; GSM935417 GEO; GSM935430 GEO; GSM935431 GEO; GSM935442 GEO; GSM935480 GEO; GSM935482 GEO; GSM935483 GEO; GSM935492 GEO; GSM935506 GEO; GSM935507 GEO; GSM935518 GEO; GSM935541 GEO; GSM935556 GEO; GSM935557 GEO; GSM935558 GEO; GSM935559 GEO; GSM935562 GEO; GSM935583 GEO; GSM935608 GEO; GSM935611 GEO; GSM935612 GEO; GSM935613 GEO; GSM935651 GEO; GSM935652 GEO; GSM935653 GEO; GSM945188 GEO; GSM945196 GEO; GSM945212 GEO; GSM945259 GEO; GSM957355 GEO; GSM1003498 GEO; GSM1003602 GEO; GSM1003603 GEO; GSM1003604 GEO; GSM1003605 GEO; GSM1003616 GEO; GSM1003617 GEO; GSM1003634 GEO; GSM1010721 GEO; GSM1010729 GEO; GSM1010730 GEO; GSM1010731 GEO; GSM1010744 GEO; GSM1010745 GEO; GSM1010760 GEO; GSM1010771 GEO; GSM1010779 GEO; GSM1010780 GEO; GSM1010850 GEO; GSM1010881 GEO; GSM1010893 GEO; GSM1719835 GEO; GSM2071261 GEO; GSM2071262 GEO; GSM2071297 GEO; GSM2071298 GEO; GSM2071299 GEO; GSM2071300 GEO; GSM2071301 GEO; GSM2071302 GEO; GSM2071303 GEO; GSM2071344 GEO; GSM2071564 GEO; GSM4338386 GEO; GSM4338387 | ||||||||||||||||||||
Entry history | |||||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||||
Last entry update | 30-Jan-2024 | ||||||||||||||||||||
Version number | 34 |